Tigriopus californicus (tidepool copepod): 131887937
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Entry
131887937 CDS
T09700
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03022
Basal transcription factors
tcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131887937
09124 Replication and repair
03420 Nucleotide excision repair
131887937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131887937
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131887937
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
131887937
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131887937
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131887937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
SWI2_SNF2
CSTF_C
AAA_34
Motif
Other DBs
NCBI-GeneID:
131887937
NCBI-ProteinID:
XP_059092660
LinkDB
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Position
10:complement(7576258..7579169)
Genome browser
AA seq
767 aa
AA seq
DB search
MANNGYMPSAAAVNVEEKEEAKAQEDEFGAKDFRSQMKLRPDHESRPLWVAPNGHIFLET
FSPVYRHAHDFLIAISEPVCRPEFIHEYKLTSYSLYAAVSVGLQTNDIIEYLTRLSKASI
PEGIVSYIKMCTLSYGKVKMVLKHNRYFVESSHPDCLQKLLKDPVVQDCRLRQAQQSNTT
DDGLISEEQTKLSAPQFTTIPKNDGQTGTNQSAENPPEVEPPANVPDDITSFYQKMDEDD
EDEATTQGNTIKTVSFEVDQEKLEVLQKRTMELDFPLLAEYDFRHDDLNPDINIDLKPAA
MLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTALTACCTVRKKAIVLCNSGVSV
EQWKTQFKQWSTADDSMICRFTSDAKDKPMGCSVLITTFNMITHTQKRSWEAEQTMKWIQ
DQEWGIMVLDEVHTIPAKMFRRVLTQVQSHCKLGLTATLVREDDKIADLNFLIGPKLYEA
NWLELQQHGFIARVQCAEVWCEMSPEFYREYLSIGSMKKMLLCVMNPNKFRATQFLIDYH
ERRNDKIIVFSDNVFALKHYAKTLNKPFIYGPTSQSERIQIMENFKFNPKVNTIFVSKVA
DTSFDLPDANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEFNAFFYTLVSQDTSEMS
FSRKRQRFLVNQGYAYKVVTRLPGIENAQLLYKSREEQVQLLQQVLAASDADIEDEEKFL
AASGGRGLKRQAGSMASMSGADDNLYIEGRRGKSSGLKHPLFKRFRM
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataacggctacatgccctcggctgccgccgtcaatgtcgaggagaaagaggag
gccaaggcccaggaggatgaattcggagccaaggactttcgctcgcaaatgaagcttcga
cccgatcacgaatcacgcccactgtgggtagctcccaacggccacatcttcctagaaaca
ttctcgcccgtgtaccgacacgctcatgattttttgattgctatttccgagcccgtgtgt
cgaccggagttcattcacgaatacaagctgacttcgtactcattgtatgcggctgtgagc
gtcggcctgcaaaccaatgacatcattgagtatctaactcgtctgagtaaggcttcaatc
cccgagggcattgtatcttacatcaagatgtgtaccctgtcctacggtaaagtcaagatg
gtcctgaagcataatcggtacttcgtggagtccagccatccagattgtcttcagaagctc
ctcaaagatccagtggttcaagattgccgactgagacaagcccaacaatccaacacaacc
gacgatggactcattagcgaagaacaaaccaagctgagtgctccccaatttacaaccatt
cccaaaaacgatggccagactggcacaaatcaatccgctgaaaatccgcccgaagtcgag
cctcccgctaatgtgccggatgatattacgagcttctatcagaaaatggacgaggatgac
gaagatgaagctactactcaaggaaacaccatcaaaaccgtctcgtttgaggtggaccaa
gagaaactcgaggtccttcaaaagcgcaccatggagttggattttccattgttggctgaa
tacgattttcgtcacgatgacctcaatccggatatcaatatcgacttgaaacccgcggct
atgctgcggccttatcaggagaaatctcttcgaaaaatgtttggtaacgggcgggctcga
tcgggagtgattgtgttaccttgcggtgctggcaaatccttagtgggagtgacggcgttg
acggcgtgttgcaccgtgcgaaagaaagccattgtgttgtgcaactccggtgtgtctgtg
gaacagtggaaaactcagtttaagcaatggtccacggctgacgactccatgatctgccgt
ttcacatcggatgccaaagacaagccaatggggtgcagtgtattgataacgacctttaac
atgattacccacactcaaaagcgttcttgggaagctgagcagaccatgaagtggatccag
gatcaagaatggggcatcatggtgctcgacgaggtccacacgatcccggccaagatgttt
cgacgcgttttgactcaagtccaatctcattgcaagctcggtttgaccgctacccttgtt
cgagaggatgacaaaatcgccgatctgaactttttgatcggtccaaaactatacgaggcg
aattggttggagcttcagcagcacggattcatcgctcgcgtccagtgtgccgaagtttgg
tgtgagatgagtcccgaattttaccgcgagtatctctctattgggagtatgaagaaaatg
ctcctgtgtgtaatgaatccgaacaagttccgtgccactcagttcctcattgactatcac
gagaggaggaatgacaagatcatcgtgttctccgataacgtgttcgctttgaagcattat
gccaaaacattgaacaagcccttcatctacggtcccacctctcagagtgagcggattcaa
atcatggagaacttcaagttcaaccccaaggtgaacacgattttcgtgagcaaggtggcc
gatacgtcattcgatttgcctgatgccaatgtgctaattcaaatctcgtcccacggtgga
tccagacgtcaggaagcccagagattgggccgtattttgcgtgccaagaaaggagccatt
gccgaagagttcaacgcgttcttttacaccctggtcagccaagacactagtgagatgtcc
ttttcacgaaaacgccagcgtttcttggtgaatcaaggttacgcctacaaagtagtgaca
cgcttaccgggcattgagaacgcccaactactctacaaatctcgcgaggagcaagtgcag
ctcttgcaacaagtgttagccgcttccgatgccgacattgaggatgaggagaagttccta
gcagccagtgggggtcgaggactcaaacgtcaagcagggagcatggcctccatgtccgga
gccgatgacaatctctacatcgaaggacgacgaggcaaaagcagcgggctcaaacacccg
ctgtttaaaagatttcgtatgtga
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