Tigriopus californicus (tidepool copepod): 131888006
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Entry
131888006 CDS
T09700
Name
(RefSeq) deoxyribodipyrimidine photo-lyase-like
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131888006
Enzymes [BR:
tcf01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
131888006
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
131888006
Prokaryotic type
131888006
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
131888006
NCBI-ProteinID:
XP_059092752
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All DBs
Position
1:220120..222653
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AA seq
518 aa
AA seq
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MSRKSQAAGPPTKKARPSTDSSSSSSSTTDIEAELERSRLTVDSDVSQFDFNAQRVRWLQ
GGPPDTPATPRPTPGAVVYWMSRDQRVQDNWALLYGQKLAWAHGWPLHVVFCLVPGFLDA
TLRQYDFMIRGLQEVERELAVRQIHFHLLRGAAAERLPAFLASRAVTCLVTDFSPLRVPR
QWVERVQKQLDPQLPFAQVDAHNVVPVWVTSDKQEYAARTIRSKIHRKLDEFLTEFPPVS
PHPHFQAADSSPIDWTEVFDWLTVDTSVPPVTSFTPGTRAALQNLAQFAGQRIPSYADRR
NDPNVAVLSNISPWAHFGQISMQRAVLYVKKHGRSSAGVAGFVEEAIVRRELSDNFCYYQ
PDYDNVKGAFGWAQKTLAEHRADPRPYLYDRSELEKAHTHDDLWNAAQIQMVKEGKMHGF
LRMYWAKKILEWTQSPEEALATAIYLNDRYQLDGRDPNGFVGCMWSICGIHDQGWAERKV
FGKIRYMNYDGCKRKFDIKKFILKYGAKAHPYLKKVKK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggaaaagccaagctgcgggcccgcccaccaaaaaggcccgcccgtccacggac
tcgtcgtcgtcctcgtcgtcgacgacagacattgaggcggagctggagcggagtcgcttg
acggtggattcggatgtatctcaattcgatttcaacgctcaacgggtccgctggctgcag
ggcgggccgcccgataccccggctacgccccgtcccacccccggagccgtagtatactgg
atgtcgcgggatcagcgggtccaagacaattgggccttgctctacgggcagaaactggct
tgggcccacgggtggccgctgcacgtggtgttttgcctggtgcccggctttttggacgcc
actttgcgccagtacgacttcatgattcgcggcctccaggaggtggaacgcgagctggcg
gtgcgccaaatccatttccatctgctccggggagcggcggccgagcggctgcctgccttt
ctggcttcgagggcggtcacgtgcttggtgacggacttcagtccgctgcgggtgccgcgt
caatgggtcgagcgagtgcaaaagcagctggacccgcaattgcccttcgcccaagtggat
gctcacaacgtggtgcccgtgtgggttacctcggataaacaggaatatgcggcccgtacc
attcggagcaaaatccaccggaaattggacgaatttctgaccgagtttccgcccgtcagc
ccgcatccgcattttcaggccgctgattcgtcgcccattgattggacggaggtctttgat
tggctcaccgtcgatacttcggtgccacccgtgaccagtttcacgcccggaacccgggct
gcgctccaaaatctggcccagtttgctggtcaaagaattccatcctatgctgaccgacgc
aatgatcccaatgtggccgttttatctaatatctcaccttgggcgcatttcggacagatt
tccatgcagcgggcggtgctctatgtgaagaagcatggccggagctcggcgggcgtggcc
ggattcgtcgaggaggccattgtgcgccgagagctatccgacaatttctgttactaccaa
cccgactacgacaatgtgaagggggcctttggttgggctcaaaagaccctggcggagcat
cgagcggatccccggccctatttgtatgaccgctcggaattggaaaaggcccacacccac
gacgacttgtggaacgcggcccaaatccaaatggtgaaagagggtaaaatgcacggtttt
ctcagaatgtattgggccaagaagatcttggaatggacccagagtcccgaagaggccttg
gccacggccatttatttgaatgaccgttatcaactggatggacgcgatcccaatggtttc
gtggggtgcatgtggtccatctgcgggatccatgaccaaggttgggccgagaggaaggtt
tttgggaaaattcggtacatgaactatgacgggtgcaagcggaagtttgatatcaaaaag
ttcatcctcaaatatggcgccaaagctcatccctatctgaagaaagtcaagaaataa
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