Tigriopus californicus (tidepool copepod): 131888118
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Entry
131888118 CDS
T09700
Name
(RefSeq) probable lysosomal cobalamin transporter
KO
K14617
LMBR1 domain-containing protein 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04977
Vitamin digestion and absorption
tcf04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
131888118
04980 Cobalamin transport and metabolism
131888118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131888118
Membrane trafficking [BR:
tcf04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
131888118
BRITE hierarchy
SSDB
Ortholog
Paralog
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GFIT
Motif
Pfam:
LMBR1
Ax_dynein_light
Apolipoprotein
Fib_alpha
DUF3496
DUF4600
Prominin
Motif
Other DBs
NCBI-GeneID:
131888118
NCBI-ProteinID:
XP_059092887
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All DBs
Position
10:complement(3776604..3778838)
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AA seq
548 aa
AA seq
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MVPHSVWATGWIPFIVVFLLSLLFSTTYIMWFRSVLVNERSKSATFFSVLALTITLVSSA
LVPVDVFLVSYMKESNGTFKTWAQDESVRMGLERSMLFTYYGFYGIVLVMAFFLLPLVFF
LNCGRSIGESDQPMEYEPFSTQLCRALKYELICLAIFAVLIVIGIFLPYKGPGPNPNSTY
IQEMDRILTEEFEVQHGENLMVFLLNVLNVIGMFFLIFYTAYGMSSLPFGMIRSRSQANR
ARDTVNKTLQELEQKIQEIKSRYEDNNENMPPYEKSYLERLEQQVRLLSRTRHDLDQNAR
KFINRIHNCLRPFQVLFGVFFALLGLMIFISLVLTSVEKALYSQGIWQGYSLRNGSLPNP
VDTILVYAQDIFPLDYIMYSGMILFFIFCSMSGIKNIGIRMCWFTVYKIKSGQTKPQALV
LMCMSLIFVLLALNVVMFSVVPDYTTYGSQYYRVNNTIGNVTTEIMQRCNNIHSPADGCI
MTRVAFLLMAYHTNIWFFGAIYYWMVWIFVVVIVAGACYSLYQARKPLVLEQDDEEELLE
DSNPFAAA
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggttccacatagtgtttgggcaacaggatggattccattcatcgtggtgttccttctg
tccctgctcttttccaccacctacatcatgtggttccgctcggtcttggtgaatgagaga
tcaaaatcggccacgttcttttccgtgctagccctcaccatcactttggtctcgtcggcc
ttggttccggtggatgtgttcctggtttcctatatgaaggaatccaatgggacgttcaag
acttgggctcaagacgaatccgttcgaatgggccttgaacggtccatgctcttcacttat
tacggattctatgggatcgttctggtcatggcctttttcctcctgcctttggtgtttttc
ctgaattgcggcaggagcattggcgaatccgaccaaccaatggagtacgaaccattttcg
actcaactctgtcgagctctaaaatatgaattgatttgcttggcgatctttgccgttctg
atcgtcattgggatctttttgccatataagggaccagggccgaatccaaactcgacatac
attcaggagatggacagaatcctcaccgaagagttcgaggttcaacacggagagaacctg
atggtgttcctcttgaacgtgctgaacgtgattggcatgtttttcttgatcttctacacg
gcttatggcatgtcttcgctgccgtttggcatgattagaagcagaagccaagccaatcgt
gccagagatacagtgaacaagaccctgcaagaattggagcaaaagatccaggagatcaaa
agcaggtatgaggacaataatgagaatatgccgccatacgaaaaatcctatttggagcgg
ttggagcaacaagtgcgtctactcagccgcactcgccatgatttggaccaaaatgcccgc
aagttcattaaccggatccacaattgtctgaggccattccaagtgctcttcggggtgttc
tttgccttacttggattaatgatatttatctccttggttctgacaagtgtcgagaaggct
ctgtactcccaagggatctggcaaggctattcgttgagaaatggttcccttcccaatccg
gtggacacgatcttggtgtacgctcaagacatattcccgttagactacatcatgtactca
gggatgatcttgttcttcatcttctgctccatgtccgggatcaaaaacattggcattcgg
atgtgttggttcacagtgtacaagatcaagtccggtcagaccaaacctcaagccttggtg
ctgatgtgcatgagtctcatctttgtcctcttggccttaaatgtggtcatgttttcagtg
gtgccggattacacgacttacggatcccagtattatcgagtcaataacactattggaaac
gtgacgactgaaatcatgcaacgctgcaacaacattcattctcctgccgatggttgcatc
atgacgcgagtggctttcctcctcatggcctaccatacaaatatctggtttttcggagcc
atttactactggatggtttggatctttgtggtggtgatcgtggccggggcttgttacagc
ctatatcaagctcgcaagcctctggttttggagcaagacgatgaagaagagctcttggag
gattcaaacccatttgccgccgcttaa
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