KEGG   Tigriopus californicus (tidepool copepod): 131888138
Entry
131888138         CDS       T09700                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03020  RNA polymerase
tcf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131888138
  09124 Replication and repair
   03420 Nucleotide excision repair
    131888138
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcf03021]
    131888138
   03019 Messenger RNA biogenesis [BR:tcf03019]
    131888138
   03400 DNA repair and recombination proteins [BR:tcf03400]
    131888138
Transcription machinery [BR:tcf03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     131888138
Messenger RNA biogenesis [BR:tcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     131888138
DNA repair and recombination proteins [BR:tcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      131888138
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 131888138
NCBI-ProteinID: XP_059092904
LinkDB
Position
10:complement(12501897..12502485)
AA seq 172 aa
MFYHISLDHEIMLHPRYFGPQLLETVKTKLFTEVEGTCTGKYGFVIAVTTVDAIGAGLIQ
PGQGFVVYPIKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPADMSFD
PNSNPPCYKTQDEDMVIQQDDEIRLKIVGTRVDASDIFAIGTLMDDYLGLVS
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttttaccacatctccttggatcatgagattatgctccatccccgatattttgggccg
cagctcctcgagacggtcaagaccaagttgttcacggaagtggaaggcacgtgtaccgga
aaatacggcttcgtcatcgctgtgaccacagttgacgccattggcgccggtttgattcag
ccaggtcaggggtttgtggtgtatcccatcaagtacaaagccatcgtgttccggcctttc
aagggcgaagttcttgacgccgtagtcacacaagtcaacaaagtcgggctcttcacggag
attgggccgctctcctgcttcatttcccgccattctattccggccgacatgagcttcgat
cccaattccaacccgccatgctacaagacacaagacgaggatatggtcattcaacaggat
gatgagattcgactcaagattgtgggcaccagggtggatgcctcggacatttttgccatt
ggcacacttatggacgattatttgggtctggtgtcgtaa

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