Tigriopus californicus (tidepool copepod): 131888270
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Entry
131888270 CDS
T09700
Name
(RefSeq) nucleoporin p58/p45-like
KO
K14307
nucleoporin p58/p45
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131888270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131888270
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
131888270
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_FG2
Nup49_C
Rootletin
Motif
Other DBs
NCBI-GeneID:
131888270
NCBI-ProteinID:
XP_059093064
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Position
10:complement(7140869..7143339)
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AA seq
589 aa
AA seq
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MSFSFKNTATSTAGTGGGGGFSFGGLSTANKPMGMAQPNAASNTTFGTSTGFGAPASAGG
LSFGQTSITPVMSNPTANTTGFGTNTSMGGTSAFGGGFGGGFGTSTASTAPNTGFGGLGG
GFGTTATTSALGAGVSFGPVKTTAPAFNSSTLASSSLAFGQPSTTPATGFGGFGTASTAL
TQATPSLGFGQTTPASSANTMGGFGSGLGAPAPAFGGASSGFGALGSTSLTTASTGLGGS
VTPAPFTGLGGAPNALAGTANSANDNKNGSKTAKENHIPNELAQTVEEFKKFTKEERSVS
SDIAHTSSKIHQKIKAETDGLMNLVKVLSAGLAKNKVQLDRIKLDAAQEILNVEIAQRTK
DTPPTLQFENTAPYDYFSRLVSKFENQMLAYRRQISETEHHLLTLTEQHSITPNDISLAI
QKLHASFTALAGKYQKLHEAVLAQKDSFIQQHRQKHGLSSINLFPQRQVSSAGSAEKIPT
TVGPSAFSGQKDLMTLARNTLNATSHPQQGNAPPTFGLGTQPGGFNSFNNPSGGGLGTLS
GTMGSGLFSNQNTLGVSSANTSTPGLFGNTMSPFGNMSSLGAGNKRGKH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcagtttcaaaaacacggccaccagtacggcgggcacgggcgggggtggcggt
ttcagttttggcggcttgtccacggctaacaaacccatgggaatggctcagcccaatgcg
gctagtaacacgacttttggcactagcacaggctttggcgcgccggcatcggcgggtggt
ctgtcttttggacaaacctccatcacgcccgtgatgtccaatccgaccgccaataccaca
ggctttggcaccaatacttcgatgggtgggacgagtgcatttgggggaggattcggcgga
ggtttcggcacgtccaccgcgtccaccgcccccaacacgggctttgggggtctgggtggg
ggatttgggacgaccgccacgaccagtgccttaggggcaggagtgtcattcggcccggtt
aagacgaccgcacccgcatttaactcgagcacattggcctcatcgagtttggcctttggt
cagcctagtaccactcctgccacgggtttcggcggttttggcacggcttcgaccgctctg
acccaagctacgccgtctttgggattcggtcagaccacacccgctagttcagctaacacc
atgggtggattcgggagtggtctgggagctcctgcccctgcttttggcggagcctcgtcc
ggttttggtgccttgggctccacgagtctgactacagcctctaccggactgggtggatct
gtgacccccgccccttttacagggttgggaggagccccaaatgccctggcgggcacggcc
aactcggccaatgacaacaagaatggctccaaaacagccaaggaaaaccacatccctaat
gaattggctcagacggtggaagagttcaagaagttcactaaagaggagcggagtgtcagt
tcggacattgctcacacttcctccaagattcaccagaaaatcaaggccgaaacggacggg
ttaatgaatctggtcaaggtgctgtcggcgggtctagccaagaacaaagtccaactcgat
cggatcaagctggatgcggctcaagagatcttgaacgtggaaatcgctcaacgaaccaag
gacactccacccactcttcaatttgaaaacacggcaccttatgactacttctcgcgtttg
gtgagcaagtttgaaaatcaaatgttggcttatcgtcgacaaattagtgagactgagcac
caccttctgaccctgacggagcaacattcgatcacgccaaatgacatttcgttggccatc
cagaagctccatgcttcctttacagccttggcgggcaagtaccagaagctccatgaagca
gttctcgcccaaaaagactcgttcattcagcaacacaggcaaaaacatggtttatcgtct
atcaacttatttcctcaacgacaagtgtcgtcggctggaagcgcagaaaagattccaacc
actgttggaccctctgccttctcagggcaaaaggatctcatgacgttggcccgcaacacg
ctcaatgctaccagccacccgcagcaaggtaatgctccgcccacctttggcttgggcact
caacccggaggattcaatagcttcaacaacccatccggtggtgggttgggaactctcagt
ggaacaatgggttctggattgttttccaatcagaatactttgggcgtatcttccgccaac
acgtccacgcctggattatttggaaacacgatgagcccctttggaaacatgtcttcatta
ggggcaggtaataagcgggggaaacactaa
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