Tigriopus californicus (tidepool copepod): 131888288
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Entry
131888288 CDS
T09700
Name
(RefSeq) vacuolar protein-sorting-associated protein 36-like isoform X1
KO
K12190
ESCRT-II complex subunit VPS36
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
131888288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131888288
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tcf04147
]
131888288
Membrane trafficking [BR:
tcf04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
131888288
Exosome [BR:
tcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
131888288
Exosomal proteins of colorectal cancer cells
131888288
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
Motif
Other DBs
NCBI-GeneID:
131888288
NCBI-ProteinID:
XP_059093089
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All DBs
Position
10:5442460..5445751
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AA seq
401 aa
AA seq
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MDRFSLSANGGILAAGEFLITSGDNVKLYDGHQKVKLMELVLIPGDLPLKACHPFQTKFE
IGELHLTSHRLIWHNPAIESAHLSLPLPLVVFLEEETGGLMKSPKIVLHLAPAHGSGASP
TANFVKLSFKQGGEKQFKAKLHDALEQKQWEIVVRQKARGPSASMPKMRTGIGGIERSIA
QKSKLRDTEISKAFQDLEKLMEMAKPMVSLAKSISSKIRDRQGEVSDDETVQFKSYLLSL
GISDPVTRDTHGTGQSYYRELAKEIFWILDQPLQESGGMMTLTDVFCRVNRARGLELLSP
EDLLNACKALPEAGLPLRLYTFDTGVSVLQLTSHTQEALILKTKEALEQSGSLTVEELSK
ASGISVILAKERLLSAERSGAACRDDTVEALRFYPNKFLTC
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggatcgattttcattgagtgccaatggcgggatcttggcagcgggcgagtttctcatc
acctccggggacaatgtcaaactctacgatggccatcaaaaggtgaaactaatggagtta
gttctgatccctggcgatttgcccttgaaagcttgccatccgtttcagactaaattcgag
attggcgaactccacctgacctctcatcggctcatttggcataatccagccatcgaatcc
gcccacttaagcctgcccttgcccttggtggtctttctcgaagaggaaacgggtggactc
atgaaaagccccaagatcgttttgcacttggccccagctcatggtagtggtgcctcgccc
actgccaatttcgtaaagctctctttcaaacaaggaggtgagaaacaattcaaggcgaaa
ttgcatgatgctctagaacaaaaacaatgggagatcgtggtgcgccaaaaggctcgtggt
ccttcagcgtcaatgccaaagatgcgcacaggaatcggtgggattgagaggagcattgcg
cagaagtcgaagctaagagacaccgagatctccaaggcattccaggatctcgaaaaactt
atggaaatggctaaacccatggtttctctggccaagagtatctcgagtaaaatccgagat
cgtcaaggagaggtatccgatgacgaaactgtccaattcaagtcctatttgctgagtcta
ggcatctcagatcctgttacacgtgatacccacggcacgggtcaatcctattatcgagag
cttgccaaagagatcttttggattctcgatcaaccgcttcaggagagtggtggcatgatg
actttgacggatgtgttttgtcgagtgaatagagcccgaggcttagaactgttgtcccca
gaggacctcttaaacgcttgcaaggctttacccgaggcaggtctacctttgcgcctctat
accttcgacactggagttagtgttcttcaactgacttcacacactcaagaagcattgatc
ttaaaaaccaaagaagcgctggaacaaagtggatcgctcactgttgaggagttgtccaaa
gcctctggtatttctgtgatattggctaaagaacgcttgctctcggcggagcggagcggg
gcagcttgtcgagatgacaccgtcgaagccttgcgattttaccccaataagttcttaaca
tgctaa
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