Tigriopus californicus (tidepool copepod): 131888313
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Entry
131888313 CDS
T09700
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03440
Homologous recombination
tcf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131888313
03450 Non-homologous end-joining
131888313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcf03032
]
131888313
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131888313
DNA replication proteins [BR:
tcf03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
131888313
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
131888313
BRCA1-C complex
131888313
NHEJ (non-homologous end-joining)
MRX complex
131888313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
SbcC_Walker_B
AAA_29
ABC_tran
Cytokin_check_N
Biliv-reduc_cat
Motif
Other DBs
NCBI-GeneID:
131888313
NCBI-ProteinID:
XP_059093129
LinkDB
All DBs
Position
10:3676727..3682891
Genome browser
AA seq
1325 aa
AA seq
DB search
MSYLESIRIQGIRSFGPKDSDFATMKFAQEKRNNKGETFVQVDPLTLILGNNGCGKTTII
EALRYATTGDFPPGSNGGRSFIHDPKMAGESVVHASVKLRFQSIQNNPHTINRAVNATQN
PKTVSIKSVDSTIKDVKRDCSLSSKCNDVNELVKEHLGVSKAILNNVIFCHQEDSTWPLD
EGSKVKDKFDEIFSAAKYQDCLKTMKDVQKKQLELARIDKTAVDFLREDRKVVREKRKNL
RSKKQDIEDMGIDLVELQESKQPIRKKLQEMNEVEQNFKGINAKKTEAETKLREYQKLIQ
GLQSEMDYQSLDLSEDEIVLMISQLDQERKNKERDLSALEMERNEVEQVQEEEDRKCRVL
AAQLGETEQKRKTWVENQNVLDQRAKRVREEFASFDLQSDLDTTAFMEKVVLELDRQRRK
VNQESDKELEEHRLANGELEKQSAVLNDKKTTIQKSRTDFSKDLAEIKKTFRQMEHAPDD
LKNIESTLEAKVMEVERHEASLEVAKTESTIEESKRELKHLETTESELRDEKEILDKNRE
EMMEIESKKKELAICDKELRRKETRNNRALSNIFDDEIPALKIIKSEFDRLYVINTKERQ
SLEADINSRKAEMSSLEKSETMIQSDVKNKEEKAKRLEDDIRQVLKDGEDLDEELQSTKD
KLNETRHDLQVKEANKFSYGETIAKLEAMMAKGKTTSCPTCRRAFEEKIEAQELKDDLQK
QIDKIPSKVRSIKDQLIQLDSRYEKLQKLHSIQEQRLELVGEIEKKKKEISDIQSEIRNH
EQALYPSESDLDKLVLKIEEQNDLREDIFKMDSLYQDQQRLKRELADLEASNGDLRTART
LEEFKKEEERVLKRIKELRKEVEKQENALRNFHAKMNMLKAAINDLEKRKLEIEKQDQEA
SALRVKEKEIQEKLIQLKAEQQTIDEQLRNLRDDLNTQGQKYNRLLAEKEASVAKSTNAL
AKANQMKDQILGIVEQIQAYENSDNERKSDELKAKIKDLTRRREVKDKKLSELKTRMKEI
QDLLMNQGNRKELSDNLTVKRHEEVVRIQEKEVEKFTNQLHILKYDDVSREQDKLTQRYT
AIQAKIEHFNGKKAQMELETKDIERELKQDKWALAESKFREANIRMRCRQHAIQDLKKYT
TALEISIGQYHKERMDVINEIIKELWRTTYKGNDIDYIKIQTDEPKESAGSTRRRNINYK
VVMVKNTTEMEMRGRCSAGQKVLAALIIRLALAETFSSKCGVIALDEPTTNLDKDNIEAL
TDALGEIVQRRSEGVNHFQLIIITHDEDLIQSLSQKVPEIKHFYRVTRNDRSLSQIQRQA
CSQYV
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatttggaatccatccgcatccaaggtatccgatcctttggacctaaggattcg
gattttgccaccatgaaatttgcccaagagaagcggaacaacaagggcgagacgtttgta
caggtcgatccgctcacccttatccttgggaataatgggtgtggcaagaccactatcatt
gaagctctcagatatgccactacaggggattttcccccgggttctaacggggggcgatcc
ttcattcatgatcccaaaatggccggcgaatccgtggtgcacgcctcggtcaagctcaga
ttccaatccattcaaaacaatcctcatactattaatcgggctgtgaatgccacgcaaaac
ccgaaaacggtcagtattaagagtgtggattcgaccattaaggatgtgaaacgggactgt
tctctctcgagtaagtgcaacgatgtcaatgaactcgtgaaggagcatctgggtgtgtcc
aaagccattttgaacaatgtgatcttctgccaccaagaggactccacttggccattggat
gagggttcgaaggttaaggataaatttgatgagatcttctcggctgccaaatatcaggat
tgtcttaaaacaatgaaagatgtccagaagaaacagctcgagttggcccgcattgacaaa
acggccgtagatttcttaagagaagatcgcaaggtggtccgtgaaaagagaaaaaatctt
cgctccaagaaacaagatatcgaagatatggggatcgatctggtggaactacaggaatcc
aagcaacccatccgaaaaaagttgcaagagatgaacgaggttgaacagaacttcaagggc
atcaatgccaagaaaactgaggccgaaactaagttgcgagagtatcaaaagttgatccaa
ggacttcagagtgaaatggactatcagagtctcgatctctccgaggatgaaatcgtgctc
atgatctcgcaattagaccaagaacgcaagaacaaagagcgtgatttgtccgccttggaa
atggaacgaaacgaggtggaacaagtccaagaagaggaagatcgaaaatgccgtgtttta
gccgcacaattgggcgaaactgaacagaaacgcaagacttgggttgagaatcaaaacgtt
ctggatcaacgagctaagcgagttcgagaggaatttgccagttttgaccttcagagtgat
ctcgatacaacagctttcatggaaaaggtcgttcttgaattggatcggcaacgaaggaaa
gtgaatcaagagtcagacaaagagctggaagagcaccgtttggccaatggagaattggag
aagcaatctgccgttctcaacgataaaaagaccacgatacaaaagtccagaaccgatttt
agcaaggatttggccgagattaagaaaaccttccgtcaaatggagcacgctcctgatgat
ttgaagaacattgaatccactttggaggccaaagtcatggaggtagagcgccatgaagcg
tctttagaagtagccaagactgagtccacaattgaggaatccaagcgagaactgaagcat
ttagagaccacggagtctgaattgagggatgaaaaagagatcttggacaagaaccgagaa
gagatgatggagattgagagcaagaagaaagaactggccatttgtgacaaagagctcaga
cgcaaggagactagaaacaatcgggccttgagcaacatctttgacgacgagattccggcc
ttgaagatcattaaaagtgagtttgaccgactttatgtgatcaacacgaaagaacgtcag
tccctggaagccgacatcaatagtcgcaaggctgagatgagcagcctcgagaaatccgag
accatgattcaatccgatgtcaaaaacaaagaggagaaagccaaacgattggaggatgac
atcagacaagtgctaaaagatggcgaagatttagatgaagagctccaaagcaccaaagac
aaactgaacgagacccgacatgatcttcaggtgaaagaagccaacaagttcagttatgga
gagaccattgccaaattagaggccatgatggccaaaggtaaaaccaccagctgtccaacg
tgtcgccgtgcctttgaagagaaaattgaagcccaagaattgaaggatgatctccagaaa
caaatagacaagatcccaagcaaggtgcggtccatcaaggaccaattaattcaattggac
tcaagatatgaaaagctccagaaactgcattccattcaggaacaaagactcgagcttgtg
ggggaaatcgaaaagaaaaagaaagagatctctgatatccaaagtgaaatccggaaccac
gagcaagctttgtatccctctgagagcgatttggacaagctcgtcctcaaaattgaggaa
caaaacgacctcagagaggatatcttcaagatggactccttgtaccaagaccagcaacga
ctcaaacgcgaattggccgatctcgaagcttcaaatggtgatcttcgcactgcaagaacc
ctggaggagttcaagaaagaagaagaacgtgtgttgaaacgaatcaaagaactgcggaaa
gaggttgagaagcaggaaaacgccttaagaaactttcacgccaagatgaacatgctcaaa
gccgctatcaacgacctagagaagcgaaaactggaaatcgagaagcaggatcaagaagcc
tcagctttgagggtgaaggaaaaagagatccaagagaaactaatccaactgaaagccgaa
caacagaccattgacgagcaactccgaaatctccgggacgatttgaacacacagggccag
aagtataatcgcctcttggctgagaaagaggccagtgttgccaaaagtactaacgctctg
gccaaggccaatcagatgaaagatcaaatccttgggatagtagagcaaattcaagcttac
gaaaactctgataatgaaagaaaatccgacgagctcaaggccaagatcaaggatctgacg
agaagacgtgaagtcaaggacaagaagttgtccgaattgaagactcgcatgaaggagatc
caagacctcctcatgaatcaaggtaatcggaaagagctgtcggataacctaactgtcaag
cgccacgaagaggtggtgcgtattcaagaaaaggaggtggagaagttcaccaatcagttg
cacatcctcaaatacgacgatgtctctcgggagcaagacaagttaacccaaaggtacacg
gctattcaggccaagattgagcacttcaacgggaaaaaggctcaaatggaactcgaaacc
aaagacatcgaacgcgaactaaaacaggacaagtgggccttggcggaaagcaaatttcgt
gaggccaatatccggatgcgttgccggcaacatgccattcaagacctcaagaagtacacg
actgccctcgaaatatccataggacagtaccacaaggagcgaatggatgtgattaacgag
atcatcaaagaattgtggcgaaccacgtataagggcaacgatatcgactacatcaaaatc
cagacggatgaacccaaagagagcgcgggcagcactcgtcggcgaaatatcaactacaag
gtggtcatggtgaagaacaccacggaaatggaaatgagaggccgttgctctgcgggtcag
aaggttttggcagctctgataatccgcttggctttggcggaaacattcagctcaaaatgt
ggcgtgattgctctggatgaacccactacgaacctagacaaggataacatcgaagctctc
accgatgcccttggagagattgttcaaagacgaagtgagggagtcaatcatttccaattg
attatcatcacccacgacgaggatcttatccaaagtttgagccaaaaagtacccgaaatc
aagcatttttaccgtgtgacccgaaacgatcgaagtctgtcccaaatccaacgccaagct
tgttctcagtatgtttga
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integrated database retrieval system
