KEGG   Tigriopus californicus (tidepool copepod): 131888380
Entry
131888380         CDS       T09700                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03020  RNA polymerase
tcf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131888380
  09124 Replication and repair
   03420 Nucleotide excision repair
    131888380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcf03021]
    131888380
   03400 DNA repair and recombination proteins [BR:tcf03400]
    131888380
Transcription machinery [BR:tcf03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     131888380
  RNA polymerase III system
   RNA polymerase III
     131888380
  RNA polymerase I system
   RNA polymerase I
     131888380
DNA repair and recombination proteins [BR:tcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      131888380
SSDB
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C NA-iREase1
Other DBs
NCBI-GeneID: 131888380
NCBI-ProteinID: XP_059093205
LinkDB
Position
10:6829459..6830342
AA seq 210 aa
MDDEQEIYKLWRIRKTVMALCHDRGYLVTQDELDQSIDQFKQQFGDKPSEKQPSRNDLII
LVAHNDDPTDQMFVFFPEEIKIGIKTIRAYCKRMQEENITRAIIVVQMGMTPSAKQSLAD
MAPKYILEQFLESELLINITEHELVPEHVVMTPEEKKELLFKYKLKENQLMRIQAGDPVA
RYYGLKRGQVIKIIRPSVTAGRYISYRLVV
NT seq 633 nt   +upstreamnt  +downstreamnt
atggatgatgagcaggagatctacaaattgtggcgaatccggaagacggtgatggcctta
tgccacgatcgcggctatttagtaacccaggatgagttggaccagagcatcgatcagttc
aagcagcaattcggagacaagccaagtgagaagcaaccgtcgcgcaacgatttgatcatc
ctggtggcccataacgacgatcccaccgatcagatgttcgtctttttccccgaggagatc
aagatcggcattaaaaccatccgggcctactgcaagcgtatgcaggaagaaaacatcacc
cgagccattatcgtggttcaaatgggcatgaccccgtcggccaagcaatccttggccgat
atggctcccaagtatatcttggagcagttcctcgagtcggagctgttgatcaatattacc
gaacacgagttggtaccggaacacgtggtcatgacgcccgaggagaagaaagagttgctc
ttcaaatacaaactcaaagagaaccaactcatgcggattcaggccggcgatcccgtagct
cgctactacgggctgaaacgcggtcaagtgatcaagatcattcgaccctcggtcacggcc
ggacggtatatatcgtatcgtttggtggtgtaa

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