Tigriopus californicus (tidepool copepod): 131888609
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Entry
131888609 CDS
T09700
Name
(RefSeq) transcriptional regulator ATRX-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131888609
03036 Chromosome and associated proteins [BR:
tcf03036
]
131888609
Transcription factors [BR:
tcf03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
131888609
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
131888609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Motif
Other DBs
NCBI-GeneID:
131888609
NCBI-ProteinID:
XP_059093490
LinkDB
All DBs
Position
10:complement(1433237..1443083)
Genome browser
AA seq
2324 aa
AA seq
DB search
MRAPSTRGAVPHVTDEQILVSLSPAERASLAERVLARIQGRVVAARPCPQCRQPLLLPAR
RPDPDHDREDPPDDANLGVTNAIGELSENENSPTNNSPECPSPLVQYNRSSRAPNSSPTS
NERSVDDSLPPATDSESRVPVKSAGLVEHTPPTRRCTRPPRQDGDSSLVAKSNRHSAEVG
VVIPSPARADASSTCSEPEQAAGLLSQDSEPKKPASTSTPLKTVVREDPSCDSNGSQSAF
SDSQDAPIRRSGNEFRPEKTQIDVSDLEDQSTFQASPAEDLNPSINGQSAPSLRTSQKPL
EDSDEDETEAATLTRKQIKRKAKKSPQLSSSEGEHSPLKTRQAKKKAKTLLQASSSEDEE
SPLEANPVKKRVKKLLQASNGDDDDESPVKVKKLKAKKPPHESTAEDEDSPLKTDQVKRK
AKRALLQESSSEEEASTLKVNQDRGKNSKKSPEDSDANQEDSALKGNQLKDKANTSVPDS
SPDKDSPLKINRTRAQSTKLFQTSSSDNETPAGELKPARTKKKVTKKTNDDSSAAEDGHE
GPQLNANQTQEKDKEPLDDPEAENVEDSLSNSSPKRKDNNKAKKSSEESSVESNEDSPLK
VTPTKKKAKKSARELCSDDENGVAETSLKKEKATKDITEDSNSSKVKATKAKKRANKILL
HDSSDSEEDSPLKAKQDQDEQKRSLKNLSPERVENSPTKANKVSACDQDNLSIQAKKGVL
ESSSSDETNDSPVKQTEESSPSSPSKLSSDSSPKELDERSSSLVDNGPSIVPSDLSSSEG
SPLKNTTNQSSPSVDQVKKAVLDSSSSDKESNIAAQSAKKVVLQDSSSSDGEGSRAKGSL
STPEERQTSGESSIPKAEEDLETKAKEGALQDSSDADNDSPARIKAQKAVLDSSDSDPEK
SLSVQASEDSDSRLVRRKAGNLERAKLSKEERLKRRTRFLIRKITVDTDSKLNGKASVKL
DTLSIAVLQDLEEVRRVHVKDYPQLRKLCRTRKPKADPNIDRLCDLSNLEATSGLKSKKS
ASKLPKGDNIDEDDQSSCQISPSKRKRDRRREKEKKLHLLDVSSAEEAHNSDSDLDKAVE
PKKSTDPLKSKSTRFDGLKSRNDLAKAAILDSTSGSDNNGKAKMNGQGDSHESSSDDLKV
KNGQNGDKKSVQKKGSSSISSNSVSGDGKRKRTERKDPNYMRMKLSETDSSEAEEKAKTR
RLKKEQKAKDEGDIDSGSGSGSDIKGSDHDEEANNSSDESAEFGNWKKNNKKKRNKNRIQ
DSDHDVNASDFEADDLDADSADSDSEIEVHKKKGPGKKRKKRNGNDSSDVLSNDGDDDDE
DEARPKKKRKRIKKNSSSDEEGDSDADSPNKGGRKDIRKIISEKKLSQSTKTAAADEKDR
RKRMEERQQLYNKTFEIKEGETQEELPLDFNEETKEVLVDVPTTLVKKLKPHQVNGVKFM
WDAVFESKKMVEEGKVPGGAILAHCMGLGKTLQTITLVSTVHEKFPGRVSRTLVLCPVNT
VKNWEDEFAKWLKGDLEMDVYEMSKEKDNWGRSDRLKVWHQEGGVLIMGYDMFRNLTNEA
KKYNRKQRDIFQKSLCDPGPDLVVCDEGHVLKNLKSALNKAMNKIKTKRRILLTGTPLQN
NLSEYFAMVNFVKPQLLGTFNEFKNRFVNPIQNGQHSDSTDRDVRVMKKRSFILSDLLKG
CMQRLDYNVLVPYLQPKHEFVLCICLTDFQKKLYSYYLENFARAGQIGSDGKLEGGKKGG
LFYDVQNLSRVWNHPHILAMAKSRADLKAMDESDDNMDDADETGNLQGFIDDDEASETPN
TSEDDARTSSEDEIRIEREVVKKVTRSQQDSDIVKGLDEAKSEALASEKGWWGQFLSEDN
ELDRLENGSKMLILMDILKECEMLGDKVLVFSQSLLSLDLIEDFLARAGQNTATAEDSTL
MSYLGTWVHGKDYFRMDGSTPPDTRKRWCNYFNKTTNHRMRLFLISTKAGGLGINLVAAN
RVIIFDASWNPAHDVQSIFRVYRFGQTKPVYIYRFLAKGTMEEKIYDRQVTKQSLSARVV
DEHQIERHFSVNELATLYEFQDEPIESRPVPKVPKDRLLAELLTKHDKLIWKYHDHDSLL
ENQVDENLTEEERKAAWEEFENEKKGLVTGVDPAVQALLAQSINPQAIQQQYRLQYPHLS
EEQIIQATRALIMQMQSGIHRRPAYDKSHYQQEMARARQQEKALYPGMYRKTDKFTGNLQ
NAPNTEAWHAQVMQQQRQYSQMQQMQQQIQQSRLQQMQMLQAQLSQINGPQGQLQPQALT
QDQEPEEIVLDGAPVMGEPVVVSPPRPSTSRRGRPRLDPDSDLY
NT seq
6975 nt
NT seq
+upstream
nt +downstream
nt
atgcgagctccatcgacccggggggcggtgccgcacgtgacggatgaacaaattctagtc
agcttgagtccggccgagcgggccagtctggctgagcgcgtgctggcccgcattcaaggc
cgagtggtggccgcccgcccgtgcccccagtgccgacaaccgctgctgctacccgcacgc
cgcccggacccggaccatgaccgtgaagacccgcctgacgacgctaatctaggggttacc
aacgccattggtgagctctcagaaaacgaaaactctccaaccaacaattcccccgagtgt
cccagccctcttgtgcagtacaataggtcttctcgggcgccgaattccagcccaacctcc
aacgaaagatccgtggacgattcgcttccaccagccaccgattctgaatcgcgtgtgccc
gtcaaatctgcgggtttggtagagcacaccccacccactcgacgctgtacccgtcctcct
cgtcaggatggggactcatcgctagtcgcgaaatcgaaccgtcactccgcggaagtgggc
gtggtgatcccaagccccgcccgggccgacgcttcatcaacgtgctcagagccggaacaa
gccgccgggcttctgagtcaggattccgagccaaagaaaccagcatcgacttccacacca
ttgaaaacagttgtcagagaggacccgagttgtgactcgaacggcagtcagagtgcattt
tccgattcacaagacgcgcccatcaggaggtccggaaacgaattcaggcctgagaagact
caaattgatgtttccgacttggaggatcaatccacgtttcaagccagccctgctgaggat
ctcaatccctcgatcaatggtcagagtgctccgtccttgaggaccagccagaagcccctt
gaggattccgatgaagatgaaactgaagcagctacattgacaaggaagcaaatcaagaga
aaggccaaaaaatcgccacagctatccagttccgaaggtgaacattctccactcaagacc
cgtcaagccaagaaaaaggccaagacattgcttcaagcatccagttctgaagacgaagaa
tctcctttggaggccaatccagtcaaaaagagagttaaaaagttgctgcaggcttccaat
ggtgatgatgatgatgaatctccggtaaaagtgaaaaaactaaaggctaagaaaccgcct
catgaatccactgcagaagatgaggattcgcctctgaagacagatcaagtaaagaggaag
gccaagagagcgcttcttcaggaatcgagttcagaagaggaagcttccaccctaaaagtg
aatcaagaccgagggaaaaattccaagaaatcacctgaggactccgatgccaatcaagaa
gattcagccttgaaaggcaatcaattgaaagataaagccaacacgtctgtacctgattcc
agcccggataaggattctccattgaagatcaatcgaaccagagcacagtccaccaaatta
tttcaaacctcaagctctgacaatgaaactcctgctggggaattgaagcccgcccggacc
aagaaaaaggtaactaaaaagaccaacgacgattctagtgcggctgaagatggacatgaa
ggtcctcaactgaatgctaatcagactcaagaaaaggacaaggaaccccttgatgacccc
gaggctgaaaacgttgaggattctctctcgaactcaagtccaaaacgaaaggacaataat
aaagccaagaaatcgtcagaagagtccagtgtggaaagcaatgaagactcaccgttgaag
gtcaccccaaccaagaaaaaggccaagaaatccgcacgagagttgtgttcagatgatgaa
aatggtgtagctgagacaagcctcaaaaaggaaaaagccacgaaagacatcactgaagac
tcaaacagttccaaagttaaggccactaaggctaagaaaagggccaacaagatactgctt
catgactcaagtgactctgaggaagattctccattgaaagccaagcaagaccaggacgag
caaaaaagatctctgaaaaatttaagcccagaacgagttgaaaactcacccacgaaggcc
aataaagtcagtgcttgtgatcaagacaatctgtctattcaagccaaaaaaggtgttctt
gaatcaagctcctcggacgagactaacgattcacctgtaaaacaaaccgaggaatcctct
ccttcaagtccatccaagctaagctcagactcgagccctaaagaactcgatgaacgctcc
tcttctttggtcgacaatggtccaagtattgtcccttcagacctttcgtcttctgaagga
tctccgctaaaaaacacaaccaaccagtcctcaccctccgttgaccaggttaaaaaggcc
gtgcttgattccagtagttctgacaaagagtcaaatatcgccgctcaatccgccaaaaag
gtcgttcttcaagattcaagttcttctgatggtgaaggctcccgcgccaaaggttccctc
tccacccctgaagaacgccagacatccggagagagcagtataccaaaagccgaagaagat
ctcgagaccaaagccaaggaaggtgctcttcaggattcgagtgacgctgacaacgacagt
ccagctcgaatcaaggcccaaaaagccgtccttgactcgagtgactccgatcctgagaaa
tctctctctgttcaggcctcagaagacagtgattcacgcttggtcagacggaaagcaggg
aatctggaaagggccaagctctcaaaagaagagcgtctgaaacgccgaactcggtttttg
attcggaaaatcaccgtggacaccgactcgaagctcaacggaaaggcctccgtgaagctt
gatacgctctcaattgccgttctccaggatttggaggaagtgcgacgagtccacgtcaaa
gattacccgcagcttcggaagctctgtcgtacccgcaagcccaaagcggatccaaatatc
gacaggctttgcgatctttccaatttagaggctacatccggtctgaaatccaagaaaagc
gcgtcaaagctgcctaaaggagacaacatcgacgaggacgaccaatcttcatgccaaata
tctccttccaaacggaaacgggatcgacgtcgtgagaaggagaagaaactccatttgttg
gacgtgagctcagcggaagaggctcacaattctgactctgacttggacaaggctgtcgag
cctaaaaaaagtacagatccgttgaagtcgaaatccacccgttttgacggactgaaaagc
cggaacgatctggccaaagcagccatcctggattcaaccagtggctccgataacaacggc
aaggccaagatgaacggccaaggagattctcacgaatcgtcgtcggacgacctgaaggtg
aaaaacggtcagaacggagacaagaaatccgtgcagaaaaagggttccagtagcataagt
agtaatagtgtaagtggtgatggaaagcgcaagagaaccgaacggaaggatccgaattac
atgcgcatgaaattgagtgaaactgattccagtgaggcggaagaaaaagccaagacccga
cggttgaagaaggaacagaaggccaaggacgagggtgacattgacagtggcagtggcagt
ggcagtgacatcaaaggctccgatcatgatgaggaagctaacaactcatcagatgaatcg
gcggaatttggcaattggaagaagaacaacaagaagaagagaaacaagaatcgcatccaa
gattcggatcatgacgtgaatgcgtccgattttgaggcggatgacttggacgccgattcg
gctgattcagactcggaaattgaggtgcacaagaagaaaggcccagggaagaagcggaaa
aagcgcaatggtaacgattcttcggatgttttgtccaatgatggcgatgacgacgatgag
gatgaggctcgaccgaagaagaaacgaaaacgtatcaagaagaactcttcgtcggacgag
gagggagactcagacgcggattctccaaacaaaggcggacgtaaggacatccggaaaatc
attagcgaaaagaaattgtcacaatctacaaaaaccgccgcggccgacgagaaagatcgc
cgaaagcgaatggaagaaagacaacagctctacaataagactttcgagatcaaagaaggt
gaaacccaagaggagctacccctcgatttcaacgaagaaaccaaagaggtcctggtggat
gtgcccacgaccttagtgaagaagctcaaaccccaccaggtcaacggcgtcaagttcatg
tgggacgcagtattcgagtccaaaaagatggtcgaagaaggcaaagtgcccgggggtgcc
atcctggcccactgtatgggtttgggcaagaccctgcagaccatcaccctcgtgagcacg
gttcatgagaagttcccggggcgcgtgagccgcacactcgtgctctgtcccgtgaatacg
gtcaagaactgggaggatgagttcgccaagtggctcaagggtgacctcgagatggacgtg
tacgagatgagcaaagagaaggacaactggggacgctcggatcggctcaaggtgtggcac
caagagggcggtgtgctcatcatgggctacgacatgttccgcaacctgaccaatgaggcc
aagaagtacaatcgcaagcagcgggacatctttcagaagtcgttgtgtgatcctgggccg
gacttggttgtgtgtgatgagggtcacgtgttgaagaatctcaaatccgccctgaacaag
gccatgaacaagatcaagaccaagcggcggatccttctcacgggaacgcctctgcaaaat
aacttgagcgagtatttcgccatggtcaactttgtcaaaccccaactgttgggcacgttc
aacgagttcaagaaccgcttcgtgaatcccattcagaacggtcagcactcggattccacg
gatcgcgatgtgcgcgtcatgaagaagcgctcgttcatcctcagtgatcttctcaaaggc
tgcatgcagagactcgactacaacgtactcgtgccctatctccaacccaagcacgaattc
gtcctctgcatctgcctcacggacttccaaaagaagctctactcctattacctcgagaac
tttgctcgcgccggacaaatcgggtccgacggaaaactcgagggtgggaaaaagggcggt
ctcttttacgacgttcaaaatctctcccgcgtctggaatcatccgcacattctggccatg
gccaagagccgcgccgatctgaaggccatggacgagtctgacgacaacatggacgacgca
gatgaaacgggcaatctccaagggttcattgacgacgacgaggcgagtgagaccccgaac
accagtgaggatgacgcccgcaccagtagtgaggacgagatccgcatcgagcgtgaggtg
gtcaagaaagtcacccgcagtcagcaggactccgatatcgtgaaagggctggatgaggcc
aagtcagaggctctggccagtgagaaaggctggtggggtcaattcctgagcgaggacaac
gaactagaccggctcgaaaacggctccaagatgttgatcctcatggacatcctgaaggaa
tgcgagatgctcggcgacaaggtccttgtgttcagtcagtccctgctctcgctcgatctg
attgaggacttcttggccagagccggtcaaaataccgccaccgccgaagattccacactc
atgtcctatttgggcacttgggtccacggcaaggactactttcgtatggacggttccact
ccgccggatacccgaaagagatggtgcaactacttcaacaaaaccaccaaccatcgcatg
cgattatttttgatctcgaccaaggccggaggactgggcatcaatctggtggcggccaat
cgagtcatcatctttgatgcctcgtggaatcccgctcacgacgttcaatccatctttcga
gtctatcgctttggtcaaaccaagcccgtgtacatctaccgattcctggccaagggcacc
atggaggagaagatctacgatcgccaagtgacgaagcaatccctgtccgcacgagtggtg
gatgagcatcagattgagcggcatttttccgtgaatgagctggccactctctacgaattc
caagacgaacctattgagagccgcccggtccccaaggttcccaaagaccgccttctagcc
gagttactcacgaagcacgataagctcatttggaagtatcacgaccacgattcattgttg
gagaatcaggtggacgagaatctgacggaagaggagcggaaggcggcttgggaggagttc
gagaacgagaagaagggcctggtgaccggcgtggatccggccgttcaggcccttttggcc
caaagcatcaatccgcaagctattcagcaacaatatcgcctacagtatccccatctctcc
gaggaacagatcattcaagccactcgagctctgatcatgcaaatgcagagcggaatccac
cggagacccgcctacgacaagagccattaccaacaggaaatggctcgggcccgacagcaa
gagaaggcgttgtatccgggaatgtaccgtaagacggacaagttcacgggcaaccttcaa
aacgcccccaacacggaggcgtggcacgcccaagtcatgcagcagcagcgtcagtacagc
cagatgcagcaaatgcagcaacaaatccaacagagtcgtctgcagcagatgcagatgctc
caagctcaacttagccagatcaacggcccccaaggccaactccaaccccaggcactcacc
caagatcaggagcccgaagagatcgtcctggacggagcgcccgtgatgggcgagccggtt
gtggtatccccgcctcgcccttccacgagtaggcgtggccgtccccgcctagaccccgac
tcggatctctattaa
DBGET
integrated database retrieval system
