Tigriopus californicus (tidepool copepod): 131888672
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Entry
131888672 CDS
T09700
Name
(RefSeq) WD repeat-containing protein 3-like
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
131888672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tcf03009
]
131888672
Ribosome biogenesis [BR:
tcf03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
131888672
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_2nd
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
WD40_Gbeta
Beta-prop_EML_2
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_EML
DSE1_N
WDR90_beta-prop_4th
ASA1
Beta-prop_WDR75_1st
Utp12
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_NOL10_N
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_IFT140_1st
CFAP251_N
PEP5_VPS11_N
Beta-prop_Aladin
Beta-prop_SPT8
PAC11
WDR54
WD40_like
Beta-prop_IP5PC_F
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_DCAF12
Beta-prop_ACSF4
Beta-prop_RSE1_2nd
VPS11_N
PROPPIN
BCAS3_WD40
Beta-prop_pof12
NleE
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
131888672
NCBI-ProteinID:
XP_059093573
LinkDB
All DBs
Position
10:<13386864..13389767
Genome browser
AA seq
955 aa
AA seq
DB search
MGLTKQYRRFEALASFGVIASGHGGLITLNRGAQTRWAVTAKAERGQLWNLKNGDKLRDF
MGEKHEVTAMALTPDWRGEATKLVLGYHDGAIRVFDLDTAECLVTLNGHKSCITALTLDG
SGLRLASGSRDTHVIVWDMVNECGLYRLKGHKGPVTQVRFMTDRPVLISSSKDTRVKFWD
LDIQHGFATLTRHLTEIWDFVLVKNDQYLVTGSGDAELRIWKLTFDPEFSALNKSQKLDL
PGQASKKFKVNETEEDEFEDLDEDNLDADSGLKIEKLGSILRGAPDKVSHVVTDVSGRLM
AVHGRDNSVELFLINNEEEVKKRMQKKAKKERRKVAKKEGGSEVQESVSTVNLDTPTIQE
EFRRLKVIRAGGKVRHLSLEVTRDETLGVIDLITANNQIESFTIDLIEKNADPEMKLRFD
HPGHRSDVRTVQFSSDNTSILSGSHESIKIWNRNVQVCVRTVASGYCLSSLFVPGDRQVI
VGTRKGTIQIFDIASAEMTEEIEAHDKEIWAMSLNPDKKGFVTASADHSVKFWAFELLKV
GEKRQLSILHKRTLKLDEDAIAVKLSEDGRMIAVSLMDSTIKVFFVDTLKFFLSLYGHKL
PALALDISTDSTLIVTGGADKNIKIWGLDFGDCHRSIFAHDDSVTAIQFIPNTHLFFTGG
KDGKIKQWDADNFERILTLDGHHGEIWSLAVAPNSRFLVSSGHDKTLRLWERTEEILVLE
DERETEREREEEDELATGEARIIPGQEEKEADLPGKKTAETEKGAERLMEAIQVYRDYTE
EVKEAESEAKALKKEPIIPVMPPLMLAYQCQTPEHYMAKMIGLIKSSEIEQTLLVLPFDV
TVHLLEIIRLLLEKRLSVEVICRIFFFIVEVNFGPLSSAKELRPLLQDLRGLAKDRLQEV
KDTVGFNMAALRYTLQQKDEKQKAIELQDAVSKFKDKRKKKKNKERALQTAILTL
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgggtttaactaagcaatatcggcgtttcgaggctttggcctcgtttggcgtgatcgcg
tcgggtcacgggggtttgattaccttgaatcgcggagctcagacccggtgggccgtgacc
gccaaagctgaacgcggacagctttggaacctcaagaatggcgacaaactacgcgatttc
atgggcgaaaaacacgaggtgacggccatggcactgacaccggactggcggggtgaggcc
accaaattggtgctgggctatcacgatggggccattcgcgttttcgatctggataccgcc
gaatgtctggtcacgttgaacgggcacaaatcgtgcatcacggccttgaccttggatggg
agtggcctgcgactggcctcgggctcgcgcgatacgcatgtaattgtctgggatatggtc
aatgaatgcggtctctaccgactaaaaggccacaaaggtccggtgacccaggtgcgattt
atgaccgatcggccggttctcatttccagttccaaggacacgcgtgtcaagttctgggat
ctggacatccaacatggctttgccaccctcacccgacacttgaccgagatttgggacttt
gtcctagtgaaaaatgatcaatatctcgtgaccgggtcaggtgatgccgagctccggatc
tggaagctgacctttgatccggagttttccgctctgaacaaaagtcaaaagctcgaccta
cccggtcaagccagtaagaagtttaaagtcaacgagaccgaggaagacgagtttgaagac
ttggacgaggacaacttggacgcagacagtgggttgaagatcgagaaattgggctccatc
ctccgcggggctcctgataaggtttcccacgtggtcaccgatgtctcgggtcgactgatg
gccgttcatgggagggataactcggtggaattgtttctcattaacaacgaagaagaagtc
aagaagcgcatgcagaagaaggccaagaaagagcggcggaaagtcgccaagaaggagggc
ggaagtgaggttcaagaaagtgtctccaccgttaacctcgacacgcccactatccaggag
gagtttcgccgtctgaaagtcatccgtgccggtggcaaagtgcgtcatttaagcctcgag
gtgactcgggatgaaacattgggcgtgattgacctgatcaccgccaacaaccagattgaa
tccttcaccatagacttgatcgagaaaaacgcggatcccgagatgaaactccgtttcgat
catcccggacatcgctccgacgtgcggaccgtccaattcagttcggataacacctcgatt
ctttcgggaagtcatgaatcaatcaagatctggaatcggaacgtccaagtttgcgttcga
acggtagccagtggctactgtctatcgtccttattcgtgcccggcgatcggcaagtgatc
gtaggcacccgtaaaggtacgatacaaatcttcgacatcgcctcggccgagatgaccgag
gagatcgaagcccatgacaaggagatctgggccatgagtttgaatcccgacaagaaagga
ttcgtgacggcgagtgcggatcattccgtcaagttttgggcctttgagctcctcaaagtg
ggcgagaagaggcaattgagcatcctgcacaagcgcaccctaaagttggacgaggacgct
attgccgtgaaactgagcgaggatggccgcatgattgccgtctcgttaatggattcgacc
atcaaggtgttctttgtggacacgctcaagttctttctatctttgtacggacacaaattg
ccggccttggccttggacatttccaccgattcgacgctaattgtcacaggtggtgcggac
aagaacatcaaaatctggggtctagactttggcgattgccacagatccattttcgcccac
gatgatagcgtgacggccattcagttcatacccaacactcatctgttcttcacgggcgga
aaggatggcaaaatcaagcaatgggacgcggacaattttgaacggattctcactctcgat
ggacatcacggagagatatggagcttggctgtggctcccaattccaggtttctcgtctcg
tccggtcacgacaagactctgcgattatgggagaggaccgaggaaattttggtcttagag
gacgagcgagaaactgaacgtgaacgcgaagaagaggatgaactagccacgggtgaggcc
agaatcattcccggtcaggaggaaaaagaggcggatttgcccggcaaaaagacggccgag
acggaaaagggcgcagagcgactcatggaggccattcaagtgtatcgcgattacacggaa
gaagtgaaggaagccgagagtgaggccaaagctctaaaaaaagagcccattattcccgta
atgccgcctttgatgttggcttaccaatgccaaacacccgagcattacatggccaagatg
atcggtctgattaaatccagcgaaatcgaacaaaccctccttgtgcttcctttcgacgtg
acggttcacctgctggaaatcattcgcctcctcctggagaaacgtctctcggtggaggtg
atttgtcggatatttttcttcatcgtggaagtcaattttggacccctgtcgtccgccaag
gagctcagacctctgctccaagacttaaggggtctggccaaagatcgactccaagaggtg
aaggacaccgtcgggttcaatatggctgccctgcgctacaccctccaacagaaggacgag
aaacagaaggccattgagcttcaggatgccgtctccaagttcaaagataagcggaagaag
aaaaagaacaaggagagagcactccaaactgccatattgacgctctaa
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