Tigriopus californicus (tidepool copepod): 131888892
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Entry
131888892 CDS
T09700
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131888892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131888892
03041 Spliceosome [BR:
tcf03041
]
131888892
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
131888892
Spliceosome [BR:
tcf03041
]
Complex B
Other components
Prp19-related factors
131888892
Complex C
131888892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_10
TPR_2
TPR_15
TPR_12
Mad3_BUB1_I
NRDE-2
SNAP
PPR
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
131888892
NCBI-ProteinID:
XP_059093823
LinkDB
All DBs
Position
10:complement(7089161..7092077)
Genome browser
AA seq
876 aa
AA seq
DB search
MTLSGDDLKAALDAPSSGIHVVFNDEDLPFEEELLRNPHSLKSWLRYIDARSEAPKKSLN
LLYERALKALPGSYKLWYHYLKVRRKQVKGRCLTDPIFEEVNNAFERALVFMHKMPRIWM
DYCTFLVSQQKITRTRRVLDRALRALPITQHDRIWKIYVNFIKRHPIPETSVRVFRRYLQ
LCPEQAEDFVDYLKEAGNLDEAAKWLAKIVNNQDFVSKHGKSNHALWYELCELISKNPLD
VKSLNVDAIIRGGLRRYTDQVGHLWNSLADYYIRSGLFERARDIYEESIQTVTTVRDFTQ
VFDAYAQFEELALSKRMEDLEGNEQPSQDEELEIEMLMARFEDLMERRPLLLNSVLLRQN
PHNVAEWQKRVTLLEGKPHEIISTYTEAVQTVDAKQAVGKLNSLWVNFAKFYETNKQIGD
ARIIFEKATHVSYLKVDDLANVWCEWVEMELRHDHHEECLKLLQRATAPPPRKVSYHDAA
ETVQVRLHKSLKVWSLYADLEESFGTFQSTKAVYDRILDLKIATPQIIINFGLFLKENNY
FEEAFKCYEKGIALFRWPNVFDIWNTYLSEFLERYGGKKLERARDLFEQCLETCPEKYAK
PIFLLFAKLEEEHGMARHAMAVYDRAIDAVEKSERCALFNIYLRKAAEIYGVTRTRQIYE
KAIEVLEDREARDMCQRFAEMETKLGEIDRARAIYGHCSQMCDPRVAPQFWAAWKDFEVR
HGNEDTVREMLRIKRSVQHIYNTQVNMMSAQMLQDGVNAPSTLDELAAVSPDSDIKDEMR
LLEAKAVEKDGTNSSSVSFVRGETQSKEVEALAKQPTVNPAEIDLGDDDDEDDSDEENEE
ETEKAPKPARIGGVEKQAIPAQVFGSLKRNEDDEED
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgaccttaagcggcgacgacctgaaggccgctctggatgcgccctcttccggcattcac
gtggtgttcaatgacgaggacctgccctttgaagaggagctgctccggaatccgcactcg
ctcaagtcctggttgcgctacatcgacgctcgctcggaagccccgaaaaagagtctgaac
ctgttgtacgagcgagccctcaaggcgctacccgggtcgtacaagctctggtatcactac
ctcaaggtccgtcggaagcaagtcaaaggccgatgtctgacagatccgattttcgaagaa
gtgaacaacgccttcgagcgcgccctggttttcatgcacaagatgccccggatctggatg
gattattgcacctttctcgtgtcccaacagaagatcacgcgtactcgccgcgtcctggat
cgggccttacgcgccctgcccatcacccaacacgatcgcatctggaagatctatgtcaat
ttcatcaagcgacacccgattccagaaacctcggttcgagtgttccgccgatatcttcag
ttgtgtcctgagcaagccgaggatttcgtggactacctaaaggaagcagggaatttggat
gaagccgccaagtggttggccaaaatcgtaaataatcaagattttgtctcgaaacacggc
aagtcgaaccacgccttgtggtacgagttgtgtgaattgatctcgaagaaccccttggac
gtcaaatcgctcaatgtggacgcgattattcgcgggggtctgcggcgatacacggatcag
gtgggccatctatggaattcattggccgattattatatccgaagcggtcttttcgagcgg
gcacgggatatttacgaggagtcaatccagaccgtgaccacggtcagagattttacccag
gtgtttgacgcttacgctcaattcgaggagttggctctgtccaagcgaatggaagacctt
gagggcaacgagcaaccctcgcaggatgaagaattggagattgaaatgctcatggcccga
ttcgaagacctcatggagcgacggccgcttttgctgaattcagtgttgctgcggcaaaat
ccgcataatgtggcggaatggcaaaagcgcgtgactttgctggagggtaaaccccacgag
atcattagtacctacacggaagccgtccagactgtggatgccaagcaagcggtgggcaag
ttgaactcactttgggtgaattttgccaagttctacgagaccaataaacagattggcgat
gctcgaatcattttcgaaaaagccactcatgtgtcatatttgaaagtcgacgatctggcc
aatgtctggtgtgaatgggtggaaatggaactccgacacgatcaccacgaagaatgcttg
aaactcttgcaacgggctacggctccgcctcctcgtaaagtgtcctaccacgatgcagcc
gaaacggttcaagtccgtctgcacaaatctctcaaagtctggtcgttgtacgcagatctg
gaggagagctttggtacgtttcagtcgaccaaggcggtttatgatcgcatccttgatctc
aagatcgctactcctcaaatcattatcaattttggacttttcctcaaggagaacaactat
ttcgaagaggcgttcaaatgctacgagaaaggcattgctcttttccgatggcctaatgtc
tttgatatctggaacacgtacctctccgagttcttggaacgctatggtggaaagaaactg
gaacgcgctcgtgatctgttcgaacaatgcctggagacttgccccgagaagtatgccaag
cccatctttttgctgttcgccaaattggaagaggagcacgggatggctcgtcacgccatg
gccgtttacgatcgggccattgatgccgtcgaaaagtccgaacgctgcgccctgttcaat
atctatctccggaaagcggccgagatctacggcgtgaccaggacccgacaaatctacgaa
aaagccatcgaagtcctggaagaccgcgaagcacgcgatatgtgtcaacgattcgccgaa
atggagactaaattgggagaaattgatcgagctcgtgccatctacgggcattgctcacaa
atgtgcgatcctcgagtggcaccacagttttgggccgcatggaaagactttgaagttcgt
cacggtaacgaggacacggtacgggagatgttacgaatcaagcgatccgttcaacatatc
tacaacactcaggtcaacatgatgtcggctcagatgttgcaagatggcgttaatgccccg
tccacgttggatgagttggccgctgttagcccggactcggacatcaaggatgagatgcga
cttctggaagcaaaggcggtcgaaaaagacggcacaaattcgtcttccgtctcatttgtc
cgtggggagactcaatccaaggaagttgaggcattggctaaacagcccacagtgaacccg
gccgagatcgacttaggtgatgatgatgacgaggacgatagcgacgaggaaaacgaagag
gaaaccgagaaagcacccaaacctgcccgaatcgggggagtggaaaagcaagccattcca
gcccaagttttcggaagtctcaaacgaaacgaagacgatgaagaagattga
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