Tigriopus californicus (tidepool copepod): 131888899
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Entry
131888899 CDS
T09700
Name
(RefSeq) exosome complex exonuclease RRP42-like
KO
K12589
exosome complex component RRP42
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131888899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131888899
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
131888899
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
131888899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
131888899
NCBI-ProteinID:
XP_059093830
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All DBs
Position
10:7073074..7074245
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AA seq
291 aa
AA seq
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MATVLVSETEKLYVLHGVQEDLRVDGRARMDVRPIVVETDLVTHTSGSAHLRLANSDILV
GVKAELEATTPARPTEGRLEFFVDCSANATPDFEGRGGENLATEISQALARAYQSAHVFD
RRQLGVLAGQQCWVLYVDILILECGGNLFDAVSMAVKAALSSTRIPKISVTAVDGGEPEL
ELSDDPFDGAKLDLRSAPILVTLLRIGNFCVVDPTPEEEACASAGVVMGVNVQGHVTMTK
KVGSGSFHQRGLIEALKNGTAIGVELNRQLLNKLEEEDLQGYQRPKFGFLS
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggccacggtcctggtgagcgagaccgaaaaattgtatgtgttacacggcgtgcaagaa
gacctacgagtagatggacgggcccgtatggacgtgaggcccatcgtggtggaaactgac
ctagtcacgcacaccagcggttcggctcatctccgattggccaattccgacattcttgtg
ggcgtcaaggccgaactggaggccaccacacccgctcgtcccactgaaggtcggctggaa
ttcttcgtggattgctcggccaatgccacgcccgatttcgaaggccgtggcggcgaaaat
ttggccacagaaatcagtcaggccttagctcgggcctatcagagtgcccacgtgtttgat
cgacgacagttgggcgtcttagcaggacaacaatgctgggtcttgtacgtggatattctc
atcttggagtgcgggggcaacctttttgatgccgtgtccatggctgtaaaagccgccctc
tcgagtacccgcatcccgaaaatctcggtcacggccgtggatggtggcgagcccgaacta
gagctgtcggacgacccgtttgacggggccaaactggatttgcgatccgctccgatttta
gtgaccctcttacggattggtaatttttgtgtggtggatcccacgcccgaagaagaggcg
tgcgcctcggcgggtgtggtcatgggagtcaatgtccaaggtcatgtcacgatgaccaaa
aaagtgggtagtggtagtttccatcaacggggcttaatcgaggccttaaaaaatggtacc
gccattggcgtggagctcaaccgccagctactaaataaactcgaagaggaggacctgcaa
ggctatcaacgacccaaattcgggttcttatcttga
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