Tigriopus californicus (tidepool copepod): 131888911
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Entry
131888911 CDS
T09700
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131888911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131888911
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
131888911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
FYVE_2
AAA_27
CENP-R
AAA_29
Ribosomal_S13
Motif
Other DBs
NCBI-GeneID:
131888911
NCBI-ProteinID:
XP_059093844
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All DBs
Position
10:9034921..9037965
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AA seq
624 aa
AA seq
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MLVGGQTPSDRGPSSFVLGETTLNGLDLVGGGLESSGSARSRLVPSLSASTPPTTLLSWL
CGSQKTKGGRSLMEAWLRCPLISSDSIHFRLDLVELFVNQGALRQQMQEFLAGQSGGDLK
AILLRVEASTANLDHVCRLFIAVETCLAMVRELALAAATASTTTKTPNPTTGANCAQSSI
PSSVNGWLAPIYDCEDKLKHFLNFMDTLLDIETIKSNGQLENLRIKPSFSPHMKQFQDEL
TKLSEEMTKHRKQEESEYDLRDGSLKLEKNETLGYFFRVTLKDEKKIRSHHGVRILESLK
SGVKFRTKELDRLNNLTTKIHQEQVKEVKLILEEVNRLTQGYGKECFHRVEAFLSTVDCV
VSFANISSSAPLPFVRPNVSDTCDCIRLDHIRHPLLERVDGMHYIANSMTLTKEKGFCIL
TGPNMGGKSTFLKSIGVVVLLAQMGCFVPCSFAQIYPVDNILVRIGAGDNQSEGISTFMN
EMINMKEILDVASQRSLILVDELGRGTSTQDGFGLAWAISEHIATRLMAPCVIATHFHEL
CSLSDIHSSSFNMHCTALIQDQRFLLLYKIKHGKSSQSYGIQIAELAQFPTEVISKAKSY
LRDFEQEPSECNEIYSRVKSRRNV
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtgggcggccaaacaccttccgatcgtggaccatcatcgtttgtgctgggtgag
acgacattgaatgggctggacttagttggaggaggattggaaagctcgggttctgctagg
tcgaggcttgtcccctctttgtcagcgagcacgcctcctaccactttactctcctggttg
tgtggaagccagaagacaaaaggcggtcgatcgctaatggaggcgtggctacgctgtcct
ttgatttcatcagactcgatccatttccgacttgatctggtagagctgtttgtgaaccag
ggtgcactgcggcagcagatgcaagaatttctggcgggtcaaagcggtggcgatctcaag
gcaattttgcttcgggtggaagctagcactgcaaacctggaccatgtctgtcgtctgttt
atagcagtggaaacttgcttggctatggttcgagaattggctctagctgcggcaacggcg
tccacaacaacgaagaccccaaatccaaccacaggggccaactgcgctcaaagctcgatt
ccgagtagcgtgaacggttggcttgctcctatctacgattgtgaagacaaactgaagcat
ttcttgaacttcatggacactttacttgatattgaaaccatcaaaagcaacggccagctc
gaaaacttgagaatcaagcctagtttcagccctcacatgaaacaattccaagacgaactg
accaaattaagcgaagagatgacgaaacaccgcaaacaagaagaatccgaatacgacctc
agagatggatctttgaaattggagaagaacgaaactttgggttactttttccgcgtgact
ttgaaagacgagaaaaaaattcgtagccatcacggggtgagaattctcgagtctttgaaa
tctggtgtcaagtttagaaccaaagagctggatcgattaaacaacttaactacaaagata
catcaagaacaagttaaagaagttaaattaatcttggaggaagtgaacagactgactcaa
ggttatggcaaagagtgcttccatcgagttgaggcctttctgagcactgttgattgtgtt
gtatcctttgctaatatctctagttctgcccctctgccattcgtgaggcctaatgtatcc
gacacatgcgactgcattcgtctcgaccacattcgtcacccgctcctggaacgtgtcgat
ggcatgcattacattgcaaactcaatgaccttgaccaaagaaaagggtttctgcatcctt
acgggccctaatatgggtggcaaaagcacattcctgaaatctattggtgtggtagttctt
ttagcccaaatggggtgcttcgtcccgtgcagttttgcccaaatttacccagtggataat
attttagttcgaattggtgcaggggataaccaaagtgaaggtatttcaacattcatgaat
gaaatgatcaatatgaaagagatcctggatgtggcatcacaaagaagtctaattttggtg
gatgaactgggccgaggcacatctacgcaagacggatttggactggcctgggcaatatcg
gagcatattgccaccagactaatggctccatgtgtgattgccacacattttcacgaatta
tgttccctgtcggatattcactcttcatcatttaacatgcactgcactgccctcatccag
gaccagagattcctattgttgtacaaaatcaaacatggaaaatccagccagagttatgga
attcagatcgcggagttggctcagtttcccaccgaagtcatctctaaagcaaaatcctac
ttgcgtgatttcgaacaagaaccttcggagtgtaatgaaatttattctcgcgttaaatca
cgtagaaatgtataa
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