Tigriopus californicus (tidepool copepod): 131888929
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Entry
131888929 CDS
T09700
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03020
RNA polymerase
tcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131888929
09124 Replication and repair
03420 Nucleotide excision repair
131888929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131888929
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131888929
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131888929
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131888929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
131888929
NCBI-ProteinID:
XP_059093867
LinkDB
All DBs
Position
10:7689576..7691020
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AA seq
278 aa
AA seq
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MPYANQPSLNITELSDELVKFQLEDTDLSVANSLRRVMIAETPTMAIDWIQLEANSTVLS
DEFLAHRLGLIPLTSDEAVEAMQYSRECNCTDFCSDCSIEFTLDVKCNEDQTRNVTTADL
KSSDNRVIPVTSRNNDDDAHDYGQGTESDDILICKLRKGQELKVRAYAKKGIAKEHAKWN
PTAGVSFEYDPDNALRHTLYPKPEEWPKSEYSEIDENQVEAPYDFLGKPNKFYFAVESVG
SLKPENVVLMGTNILKKKLSDLQTELSQVLQSDALTIN
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccgtacgccaatcagccgtcattgaacatcacagagttgagtgatgagttggtcaag
tttcaattggaggacacggacctgagtgtggccaactctttgcggcgggtgatgattgcc
gagacacccactatggccattgactggattcagttggaggccaactccaccgtcctctcg
gacgagttcctggctcatcgtctgggcctgatccccttgacctcggatgaggctgtcgag
gccatgcagtacagtcgtgagtgcaactgcacggatttctgctccgactgctcgatcgag
ttcacgttggacgtgaaatgcaatgaggatcaaacgcggaacgtgaccacggctgatctc
aagtccagcgataatcgggtcatcccggtcacgtcgcgaaataacgatgacgatgcccat
gattacggccaaggcacggaatcggatgatatcctcatttgcaaattgaggaaaggccaa
gagctcaaggtgcgggcttatgccaagaaaggcattgctaaggagcacgccaagtggaac
cccacggccggtgtgtcttttgaatatgatccggacaatgccctgagacacaccctctat
ccgaaaccggaagaatggcctaaatcggagtattccgagattgatgaaaaccaagttgag
gcgccgtatgactttttgggtaaaccgaacaagttttactttgcggtggagtccgtgggc
tctttgaagccggagaacgtagtgctcatgggtacgaatatcctcaagaagaaattgagt
gacctccagacggaactcagccaagtgttgcagagtgacgctctcactatcaactaa
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