Tigriopus californicus (tidepool copepod): 131888934
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Entry
131888934 CDS
T09700
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03030
DNA replication
tcf03420
Nucleotide excision repair
tcf03430
Mismatch repair
tcf03440
Homologous recombination
tcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131888934
03420 Nucleotide excision repair
131888934
03430 Mismatch repair
131888934
03440 Homologous recombination
131888934
03460 Fanconi anemia pathway
131888934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131888934
03032 DNA replication proteins [BR:
tcf03032
]
131888934
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131888934
Transcription factors [BR:
tcf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131888934
DNA replication proteins [BR:
tcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131888934
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131888934
MMR (mismatch excision repair)
131888934
DSBR (double strand breaks repair)
HR (homologous recombination)
131888934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
zf-C3Hc3H
Motif
Other DBs
NCBI-GeneID:
131888934
NCBI-ProteinID:
XP_059093873
LinkDB
All DBs
Position
10:7052926..7055637
Genome browser
AA seq
641 aa
AA seq
DB search
MSVPSLSEGALLKICQGDNVDKPILQVLGLKKLANQNSSSDRYRVFVSDGQYSNSFSMLA
TQMNDKIINGSLVNFCLIRANNYVCNKSDNRKVIILYDVDVLTQPGQVSSTIGEPTTLNP
DGTVNSTNAKKPASVKRAAESDVGPPMAKRSPLTTPNGNQSAPKSSILDPRPVYSSSGAG
SFDPSQVSVHPIASLTPYQNKWTIKARVTHKSDIRRWNNSRGEGHLFSMDLLDESGEIRA
TAFKEQCDKYYNVVEVGKLYYVTSCSLKAANKQYSTLNNEYEMTFRDSTEVIPCNEDASN
IPTITFNFVKIKDLAAASKDSVVDVMGICKEALDATTLTSQRTQKEFTKRDIRLVDNSCN
EVNLTLWGQTAETFDGANNPVVVVKNCKVSDYNGVSLSALSSSVIQINPDMPQAHSLKGW
FESEGQSAQTQSLTQLGARGGADGSIGSNLKTLGEVKIENLGMSSEGKPEFYSTSAYIVM
LQKDRALYKACNRVNDGKACNKKVVDQGNDQYRCEKCNSQLDGFTWRIVLSFSIADSTDN
TWVTCFQEQAETILNKTAEELGALYDQDQDGYNKVFQAATFKHYDLRLSCKAEHYNDEQK
VRHTVRSVVPINYDDYKQRLIKDLESAGIEIPDKLSKGSYL
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcccatccctgagcgaaggagccctgctcaagatctgccaaggcgacaatgtg
gacaaacccattctccaggttttgggcttgaaaaagttggccaaccagaactcaagttcg
gatcggtatcgcgtgttcgtgtcagatggccagtactcgaattcgttcagtatgttggcc
actcaaatgaacgacaagatcatcaacggatccttggtcaatttctgtctgatccgagcc
aacaactacgtttgcaacaagtccgacaatcggaaagtcattatcctatacgacgtggac
gtgctcacccagcctggtcaagtctcaagcaccattggcgagcccaccacattgaatccg
gatggcacggtcaattcgaccaatgccaagaagccggcttcggtcaaaagagcggcggag
tcagatgtaggtccgcccatggctaaacggtctcctttgaccacgcccaatgggaatcag
agcgcgcccaaatcttccattttggacccccgacccgtgtatagctcgtcaggagcgggt
agctttgacccatcacaagtgtcggttcatccgattgcttcgctcacgccttaccaaaac
aagtggaccatcaaagcccgagttactcacaagtcggacattcgacgatggaacaactcc
cgaggcgaaggtcatctgttctccatggatttgttggatgaatcgggcgagattcgggcc
acggcctttaaggaacagtgcgataagtactacaacgttgtggaagtgggcaagctgtac
tacgttacttcgtgctccttgaaagccgccaacaagcagtactcgacgttgaataacgaa
tatgagatgacatttcgcgattccactgaggtcatcccgtgcaatgaagatgcttctaat
attcccacaattacgttcaatttcgtcaaaatcaaagatctggccgccgctagcaaggat
tccgtcgtggacgtaatgggcatttgcaaggaagctttggatgccaccaccttgacctca
cagagaacccagaaggagttcaccaagcgggatatccgtctggttgacaactcatgcaat
gaggtcaatctgaccctttggggccaaactgccgaaactttcgatggggccaacaatcct
gtggtggtggtcaagaattgcaaagtgtcggattacaatggcgtctcgctttcggcttta
tcctcctccgttattcagattaaccccgatatgcctcaagcccactcgctcaagggttgg
ttcgaatccgaaggtcagagcgcccaaactcagagcctcactcaattgggtgcccgtgga
ggtgccgatggatccattgggagcaacctaaagaccttgggtgaggtcaagatcgaaaat
ttaggaatgagctcagaaggcaaaccagagttctactccacatctgcctacattgttatg
ttacaaaaagaccgggctctatacaaagcttgtaatcgtgtgaatgacggcaaggcctgc
aacaaaaaggtggttgaccaaggaaatgaccaatatcgttgcgagaagtgcaactcccag
ttggacggattcacgtggcgcattgtgctcagtttcagtattgcggatagtaccgacaac
acttgggtgacgtgtttccaagagcaagccgagaccatcctgaataaaacggctgaggaa
ttaggcgccctctatgatcaagaccaagacggctacaacaaagtgtttcaagctgccacc
ttcaagcactacgatcttcgattgagctgcaaggccgagcattacaatgacgagcaaaaa
gtgaggcacacagtccgatctgtggtgcctattaattacgatgactacaaacaacgactc
atcaaggatttggaaagcgcgggtattgaaatcccagacaagctgagcaaaggaagctac
ctctaa
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