Tigriopus californicus (tidepool copepod): 131888938
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Entry
131888938 CDS
T09700
Name
(RefSeq) exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131888938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131888938
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
131888938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
131888938
NCBI-ProteinID:
XP_059093878
LinkDB
All DBs
Position
10:7068474..7071196
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AA seq
834 aa
AA seq
DB search
MAQKDEAPPPGFLPGHTQTLDEFSQTCLKTIAQAIQTSNQLPSKEKKNFEFYQTFKAFRH
IMDTESSAILGQMEKLMRWNRLRGKPSGLSVPDMMDLLTECNDQLLERININLDEVAGLK
KTHDPVLLHIAPRAQVRLSGQWNARDGKTNSSEDNTPTKLVTAKYIPRPQARFRDCIDNS
LGPFIPSLKEKPHSQKPLSILVEQADDGSEFYSHPYQYELTLFQPRKTQMQRVDPIPEVI
VKDQAKYTLVNDSPALMAMMKELKKATEIAVDVEHHWYRSFLGITCLIQISTWDQDFVID
PFSLWRELTVLNEVLTDPKIVKVLHGADHDVIWLQRDFSLYIVNLFDTHIAAKTLNYPPG
TRSYANLLQRFCQVRADKQFQLADWRIRPLPECMVDYARTDTRYLLYIYKRLKNDLIDQG
NEQNNLLRATWEGGTLLCQTRFEKPLMTERSHLDFLLKSRTMFNSRQLHALSAIFQWRDK
VARQEDESPSYVLPNHMLLKICQELPREMQGILACCSPVPPLVKQSLHPLHMMILAAREQ
PLTHVHVTEAEPVRAVITYSMTELVSDPLKSPLDLSRVMDLDSQVLMDSDGKFFDNAMST
QGTKSRPIIGVFGPTPGKGSEEQKKPIVEPTQFLSPYQRFVMLKPYLKYLEAQGDSKKDA
TDKERIESIKEHFAVLTALTTAGEKKVDEIEVKSDDKGGEEEPPVEDENEGEEYEEEERP
IKKLREGIRPKNLSKEVQKHRRNAQKNEKKKIKKKQQPNTDENQTLKRKSAQSDTSQQQQ
QSVSDDLDFSQFHSKKKRPNNQMNEWKDFKDATKKGGCKKKRFQGENKSMSYKK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcccagaaagacgaggccccacctccggggttccttccgggccacacccagacgctg
gatgagttctcgcaaacgtgtttgaaaaccatcgcccaagccatccagacttccaatcaa
cttccgtccaaagagaagaagaactttgagttctatcagactttcaaggcttttcgccac
atcatggacacggaatcatcggccattctgggccaaatggagaagctcatgcgttggaat
cgattgcggggcaaaccctcgggtttgtccgtgcccgatatgatggatttactcacggaa
tgcaatgatcaattactcgagcgcattaacatcaatctggacgaagtggcgggcttgaag
aaaactcacgatccggttttgttgcatatcgcgccccgagcccaagtgagattgtccggg
cagtggaacgcccgggacggtaagaccaattcgtcggaggataacacgcccaccaaactg
gtcacggccaagtatattccccgtccgcaagcccgattcagagactgtatcgataattct
ttgggacctttcatcccgtcgttgaaagagaagccccattcccagaagcctttgtccatt
ttggtggagcaagctgatgatggctccgagttctacagtcatccttaccaatacgagttg
accttatttcaaccccgtaagacgcaaatgcaacgtgtggatccaatccctgaggtcatc
gtcaaagatcaggccaagtacacactggtgaacgactctccagcgctcatggccatgatg
aaggagttgaaaaaggccacggagattgctgtggacgtggaacatcattggtatcgttcg
ttcttgggcatcacgtgcctcatccaaatctcaacgtgggatcaagattttgtgattgat
ccgttttccttgtggcgagagttgacggtcttgaatgaggtcctcaccgacccgaagatt
gtgaaagtgttacatggtgctgatcatgacgtcatttggcttcaacgggatttctctctg
tacatcgtcaatctgtttgacacgcatattgcggccaaaaccctcaattaccctccgggg
actcgatcctacgcgaatttgttgcaacggttctgtcaagtccgagcagacaagcaattc
caactggcagattggcggattcgacccttgcccgagtgtatggtcgattacgctcgaact
gataccaggtatctcttgtatatctacaaacgtctcaagaacgacctaatcgaccagggc
aacgaacaaaacaatctcttgcgagccacgtgggaaggtggcactctcttgtgccaaacg
cgctttgaaaaaccactcatgaccgagcggtcccatttggatttcttgctcaagagtaga
accatgttcaattcgcgccagcttcatgccttgtcagccatattccagtggagggataaa
gtggctcgccaggaagacgagagcccatcctatgtcttacccaatcacatgttgctcaag
atttgccaagagctcccacgagagatgcaaggcattttggcttgttgtagtcctgttcct
cctttggtgaagcagtcacttcatcccttgcacatgatgattcttgcagctcgagaacag
cctttgactcatgtccatgttactgaagccgaacccgttcgggccgtcattacttacagc
atgactgaattagttagtgatccgctaaaatcgcccttggatttatccagagtcatggat
cttgattctcaagtcttgatggattcggacggcaagttctttgacaatgccatgtccacc
caagggactaaatctcgtcccataattggcgtgtttggaccaactccaggcaaaggctct
gaggagcagaagaagcccatcgttgaaccgacacaatttctcagtccctatcaacgcttt
gtcatgttgaagccttatctgaagtatctggaagctcaaggtgattcgaaaaaagatgcc
actgacaaggaaaggattgagtccatcaaagagcatttcgcagttctgactgcactcacg
acggccggggaaaagaaggtagatgaaattgaagtaaagagtgatgacaagggcggcgaa
gaagaacctccagttgaagatgaaaatgaaggtgaagaatacgaggaagaggaacggcca
atcaagaaattgagagaaggtattcgacccaagaatttgtccaaagaagttcaaaagcac
aggcgaaacgcccaaaaaaacgaaaaaaagaaaataaagaaaaagcagcaacccaacact
gacgaaaatcaaacattaaaaaggaagagtgcgcaatcagatacctcccaacaacaacag
caatcagtgagcgatgatcttgatttctcgcaattccattccaagaagaaacgcccgaac
aaccaaatgaacgaatggaaagacttcaaagatgccaccaagaaagggggctgcaagaag
aagcgatttcaaggggaaaacaaaagcatgtcgtacaagaaataa
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