Tigriopus californicus (tidepool copepod): 131889001
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Entry
131889001 CDS
T09700
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131889001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131889001
03012 Translation factors [BR:
tcf03012
]
131889001
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131889001
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131889001
Translation factors [BR:
tcf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131889001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_16
ATPase
nSTAND3
AAA_19
AAA_23
Motif
Other DBs
NCBI-GeneID:
131889001
NCBI-ProteinID:
XP_059094002
LinkDB
All DBs
Position
1:2751565..2754825
Genome browser
AA seq
979 aa
AA seq
DB search
MAENYYYGSRGGSYHQPESGWGRGTGGARGYSQARGDPDTGRGGRGRGRGGGRGRGRGGG
GGPPAGLRGRDIGLYYAQRQKESQRESRSVLALPSGEQGAWQDVLRRVSALAPTRPAMEG
GHQFVDAWHQNIAANRRADRISTQPVNSGLTPQPELDESLQRQENERDPFSVMGLFREKL
PAFAMRDELLLLIRRHPVVVISGETGCGKTTQVPQFLLEDALLNGRASTTRIVCTQPRRI
SAISIAERVAQERHERLGQSVGYQIRLESRLPRERGSILYCTTGVVLQWLRSDPNLTGVS
HIVLDEIHERDLQSDFLITVLKDILPRRADLKVILMSATLNAELFSRYFRNCPMLNIPGF
TFPVTEYYLEDVLEMTGFRIPSQSRKASDKPEPVWHKHTKRGKETARASDAFQDYVTPYI
RHLESQGHYSRSTLDSLRLPESEEINHELIATLIHHIHAHEKSGAVLVFVPGWDDISKVN
RLLTDDGPYRLRGRVKIFPLHSLMPTINQKEIFSRPPEGVRKIVIATNIAETSITIDDVV
FVVDCGKIKMTNYDPKSNLATLKPEWVAEANARQRRGRAGRVQPGICYHLFTKSRAMTLD
KFVQPEMLRTKLEELVLQIKSLGFGKVAPFLSKVMEPPEDLTIERALTMLRTINALDEEE
QLTALGFHLSKLPMDPQTGKMVLLAAIFGCVDPILSVAASLTFKDAFMIPLGKEKLADEK
RRQLSRGTKSDHLLLANAIQEWEKARSNGSNRDFCWEFFLSESVLRMLVNMKQQFADYLC
EQKFLPSSNYKAKSCNRNSSNEALVRAIVCAGLYPNVASLKMKRRGPVRIPSLMTVTERR
VSIHPKSVNASESDFKHPWMVYHVMMKGNSVLVHDCTEISPMSLIFFGESLKLKNEFLSD
GTALESIQVDPFVTFNCSRETADLFKSLRAHWDKLLEMKIIKPDQTDWDTNRFEGAVIDS
IIRLLSSSPIGDSVYDDDE
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggccgagaattactattatggcagccgtggcggatcctaccatcaaccggagagtggc
tggggacgtggcacgggcggtgctcgcggctacagtcaagcccgtggcgacccggatacg
ggacggggcgggcggggccgagggcgaggcggaggacgaggacggggccgtggaggcggc
ggcggaccgccggccgggttacgcggccgtgatattggcctgtactacgcccaacggcaa
aaagaaagccagcgtgagtcccggagtgtgcttgccctgcctagcggcgaacaaggggcc
tggcaggacgtcttgaggcgggtcagcgctctcgccccgacccgcccagccatggagggg
ggccaccagtttgtggatgcttggcatcaaaacatagccgccaatcgacgggccgaccgc
atctctactcagcccgtgaatagcggcttaacgcctcagcccgagctggatgagtccttg
caaaggcaagaaaatgaacgggacccgttttcggtcatgggcctttttcgggaaaagctg
ccggcctttgccatgcgggatgaactgttgcttttaattcgccgtcatccagtggtggtg
attagcggcgagacgggctgcggcaagaccacgcaagtgcctcaatttcttctggaagat
gcgctcttgaatgggcgagcctccaccacccggatcgtgtgcacccaaccccgccggatc
tcggccattagcatcgctgagcgggtggcgcaggagcgccatgagcgcttgggccaatcg
gtgggctatcagatccgcttggaaagccgcttgccccgtgagcgaggttcgatcctgtat
tgtacgacgggcgtggtgctgcaatggctacggtctgacccgaatttgaccggcgtgtcc
cacatcgtgttggacgagatccatgaacgcgaccttcagtccgatttcctgatcaccgtg
ctcaaggacattttgcctcgtcgcgccgatctcaaggtcattctgatgtcggccacgctc
aatgccgaactcttttcccggtacttccgaaactgtcccatgttgaatatcccgggcttc
acgttcccggtgactgaatattacctcgaagatgtgctcgagatgacgggctttcgcatc
ccatctcaatcgcggaaagcgagtgacaaacccgagcccgtctggcacaaacacacgaag
cgcgggaaagaaaccgcccgagccagtgacgcgttccaagactatgtgaccccgtacatc
cgacatttggagagtcaaggtcactactccagatccacgctggacagcctccggttgccc
gagagcgaggaaatcaaccacgagctcatcgccactttgatccatcatattcatgcccac
gagaaatccggtgctgtgttggtgtttgtgcccggttgggacgatatctcgaaggtcaat
cgactgctcacggacgatgggccctatcgattgcgcggccgagtcaaaatcttcccgctt
cactctctcatgcctaccatcaatcagaaagagatattctcccgacctcctgagggagtg
cgcaagatcgtgatcgccacgaatattgccgaaacgtccatcaccattgatgacgtggtc
tttgtggtggattgcggtaagatcaagatgaccaactacgacccgaaatccaatctggcc
accctcaaacccgaatgggtggccgaagccaatgcccgacaaagacggggtcgggcgggt
cgggttcaacccggcatttgttaccacctcttcaccaagtcccgagccatgacgctcgac
aagtttgtccagccggagatgctccgcacgaaattggaggaactcgtcctgcagatcaag
tcgctcggctttggcaaagtggctccgttcttgtcgaaagtgatggaaccgcccgaggac
ttgaccatcgagcgggctttgaccatgttgaggaccatcaatgctttggatgaagaggag
cagctcactgccttgggatttcatctctccaaattgcccatggacccgcaaaccggaaag
atggtcctcttggcggccatctttggctgtgtcgaccctatcttgtccgtggccgcatcg
ttgaccttcaaagacgctttcatgattccgttggggaaggaaaagctggccgatgaaaag
cgacgacagttatcccgaggaaccaaatctgatcacctccttttggccaatgctatccag
gaatgggaaaaagcacgctccaacggctccaaccgagacttctgttgggagttctttctc
tccgaatctgtgctgagaatgttggtcaacatgaagcaacagtttgccgactacctttgc
gagcaaaagtttctcccgtcatcgaactacaaagccaagagttgcaatcgaaattcgtca
aatgaggccctagtccgagccatcgtctgtgctggcttgtatccgaacgtggcctcgttg
aaaatgaagcggcgaggaccggtcagaattccgtccttgatgacggtgactgaaaggcgt
gtgtctattcatccgaaatccgtgaatgcctccgagagtgattttaagcacccgtggatg
gtgtatcacgtcatgatgaaaggcaattcggtcttagttcacgactgcactgagatctcg
cccatgtctttgatcttctttggcgagtcgctcaaattgaagaacgaatttttgagcgat
gggaccgctttagaaagcattcaagtggatccgtttgtgacgttcaattgttctcgcgag
actgcggatctcttcaagagccttcgagcccattgggacaaattgcttgagatgaaaatc
attaaaccggatcaaaccgattgggacacgaatcgcttcgaaggcgcagtcattgattct
atcattcgtttattgtcatcttctcccattggagactccgtatatgacgatgacgagtaa
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