Tigriopus californicus (tidepool copepod): 131889033
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Entry
131889033 CDS
T09700
Name
(RefSeq) nuclear pore complex protein Nup54-like
KO
K14308
nuclear pore complex protein Nup54
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131889033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131889033
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
131889033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
HAUS6_N
Motif
Other DBs
NCBI-GeneID:
131889033
NCBI-ProteinID:
XP_059094006
LinkDB
All DBs
Position
10:complement(9633817..9635865)
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AA seq
609 aa
AA seq
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MAFSFGGTPASGATSSAFGFGGAGVTPANSMTTAFGGGFATNTSMAPPAFGTPATAPSFG
SLGGTNTGAFGGLSTANRPGALSFGGGTPGSMAGSNFGGFGAPAASGSLFGGSMANTGSI
STATSAFGGTSMGMGALGTQTTGAFGGSGGAFGGGSSFMGGGGLGLPKPAQPAQPGGLFG
GSNSLSFGSGTNASGPMAPGLGGGMAGTPVSVDQVQQLYNAVLHCTLFGDERDAILARWN
MLQASWGVGRAFFSNSAVPLALSAENPLCRFKTIGYSAMPRARNEDGILSALIKKKLSEM
EPLSQQVPQHLLGVLGQRPGLKVILEGMRSAGPDSTELTFHVQETNGQTGQTRRIPVDEI
HPFLMQPMQVQNLQKLGIESLTPKVSFSKDQIKEYLDHPPQGVDPRLWKQAHLENPNPKS
LLPVPMIGFKTLQQRIQRQDHQAKTYQGRLDAIAGDISDLQKRHQDAQAKMKEVKRRQLE
LGHRILHVIVKQEESRKIGFTIQPEEERLRIQLEALQSEISAPTQFKGRLNELLSQVRLR
SQSSNSFQSGSQTPQGAGSMDPFLLQDVKQVLKQQQDAIQALVKLITDDIKDLTVITDQL
DKDDNQTGK
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggccttcagttttggcggcacacccgcctcgggtgccacctcgtcggcttttggcttt
ggtggggcaggcgtaaccccggccaattccatgaccacggcctttggtggaggattcgcc
accaacacgagcatggccccgcctgcttttggtacgccggccactgcgccgtcttttggc
agcttgggcgggaccaacaccggggccttcgggggcctcagcacggcaaatcgcccgggc
gccctgagtttcggtggcggcacgccgggcagtatggcgggcagtaattttggcggattt
ggcgctccggcagccagtgggtcgttgttcggcggctccatggccaacaccggcagcatc
agtacggccacttcggcctttggcggcacgtccatgggcatgggggctctaggtactcaa
actacgggagcttttggcgggagtggtggggcctttggtggcgggtccagtttcatggga
gggggtggtttagggttgcctaagcccgctcagcctgctcagcccgggggactgtttggt
ggttccaactcgctaagttttggcagcggcaccaatgccagtggacccatggcccctggt
ctgggtggtggtatggccgggacgcccgtctccgtcgaccaagtccaacaactgtataac
gccgtcctccattgcaccctcttcggtgacgagcgcgatgctattctggcccgttggaat
atgctgcaagcctcgtggggtgttggccgagccttcttttctaactccgcggtgcccttg
gccttgagtgcggagaatccgttgtgtcgtttcaagaccatcggctacagcgccatgccc
cgggcccgtaacgaggatgggatcttgagcgcactcatcaagaagaaactgtccgagatg
gagccactgagccaacaagtaccccaacatcttttgggtgtgctaggtcagcgacccggc
ttgaaagtcatcctggaagggatgcgctcggctggcccggattcgactgaactcacgttt
cacgtccaagaaactaacggccaaactggacaaacacgacgcattcccgtagacgagatc
caccctttcctgatgcagcccatgcaagtgcaaaatctgcaaaaacttggcatcgaatcc
ctcacccccaaagtgagtttctcgaaagaccaaatcaaggaatatctcgaccatccaccc
caaggtgtcgaccctcggttgtggaagcaagcccatctcgaaaaccccaaccccaagagt
ctcctccccgtgcccatgattggattcaaaacgcttcaacaacgcattcaacgacaagac
catcaggccaagacttaccaaggacggctcgatgcgatcgccggagacatatcagatctc
cagaaacgccaccaagatgcccaggccaagatgaaagaggttaagcgtcgccagttggag
ttagggcaccgaatcttgcatgtgattgtcaagcaagaggaaagccgaaaaatcggtttc
accatacagcccgaagaggagaggctgcgcattcagcttgaggccctccaatcggagatc
tctgctcccacccaatttaagggccgactcaacgaactcctgtcgcaagttcgtctccgt
agtcagtcgtccaactcatttcaaagcggttcgcagacacctcaaggagccggatccatg
gaccctttcttattgcaagatgtcaagcaggtcttgaagcaacaacaagacgccattcaa
gccttggtcaagctcattacggacgatatcaaggatcttactgtcatcacagaccaactc
gataaagacgacaatcaaactgggaaataa
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