Tigriopus californicus (tidepool copepod): 131889077
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Entry
131889077 CDS
T09700
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1-like isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131889077
Membrane trafficking [BR:
tcf04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
131889077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
RasGAP
DUF5601
Motif
Other DBs
NCBI-GeneID:
131889077
NCBI-ProteinID:
XP_059094059
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All DBs
Position
10:6537714..6543546
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AA seq
1704 aa
AA seq
DB search
MSSTRGASAQDHVMSSAFRGHHHHHHHHHHHHRSSSSVKSDLLELSRHLRQERLYVQHEK
EQLQELNQKVKLAGEKLAHKAWVAHQQRENLDTLILPPRNGQTFESYSPAVCCQRANLLE
RTVFQDAYKQLNYREIHYSEFLHNLREKPKFLAVCMTVGDKVGSALMSEIISTVFSGLYG
SCLMEEDEQLVLKLLHHLLKLQLTSAPNPRKMLRQGHCAFSRLYKSFTEELFSAKIFLTS
ALYDPILRLLTEDEIFLDIDPAKAIIRFPPSERIKKFGPEDSPEFQVKLQEHRRFIVGKL
ETLTNAFISGIRSNLHCFPPSLARLLRTVFSLLMASGRAEPREVNAVCVDLIFDLFICPA
MVDPNPVGIIDTPISYIARSNLMQVAQILQVLCLWKWEEIDPRLMDLYSRFDKESMSSVL
EAMLEAGEMSEEAQEINEMAGTSRMDLTSEGSRLARLALLMTRSQLEGLIAFLKSLQHTN
DHGQELDLNELNGLLSSLPDALPGSNPATINNNNEASTSKLGKPDESFMNSDSLRAKKQA
LSARFSTAVNTVSNVSRQAVIGAPRRSESFPSTHNDDSNQVSPNSSASLSNNNMNNENGG
EDLSRLKRDPETVLVIPLLDSSEAEPPGFLTEEHVLTRSRQASRVVRMNLANLPGGSGSD
PAEEGANFMSGVAGEKRTRFSLSHDDGSIGNTSDNLEAISEAASNHSVDSSLEDEVEQAE
DPIVDNLSDMVSANVSGRGTPNVSGRDTPSSQVTNEDEINPAREDEVDNANQEVGPENGN
PAPEPINERHQPMGPHGAGRGAQGGNQNIVRPRPMMGGGGRKSGEPDLEEKFGRFEIKPP
PRPSNATVGGGPSSEQGDETRSMVSDTWSTDVLSSDTETTTGDGDRSGIPGDLEELARNR
LLDELVVPPASAGSLSNASSNLLDIVETASEAWSMDVLASDSESLRLGDLDNDDAGSVAR
SDDTRFTDDTTRSDPETLLDIGGSSSKFRVKDDPASLKGNLLRPSREAAIEQWARQSSAG
RGTPPHNLVGSGSLPRRGSDSSGISFEAARAAKRGNQAVSEGSILKKSTSRGVVPIGGPS
TSEESSEAIANLTSHLSVASIASSCESSGDSGEGKSRSNSTVASLPTGGAVINSQPSLLD
SDNPPLIPQQGGRSAPSSSTGAIPKSISFDKAVYDAAFDSDHAKGGQHKRGGDRSFFKSF
KLPKIGRNRGGGNASLGTMGGPLVSRSGSIKSDEYLRSSERLTSDDSFNIPEHEEGPMLR
RVASDETSDDILAKYRKKAAAQVDSAPDSTTSNDAVDGGGDLSMNEEQDERLVIDPSNIE
GSYAFQDAKRKLRLMLSDADITTLSNLPISSMKKMDGRGSNGAAVQNKNSNNHPQQPHQD
NEIVWFLRVQLAESHNLQDRSRIAQLHETLRCVELFDSEGCRKLVRSLRDDYKRRAPYLN
YLLRSRQGLLSTLAHQKTLLGRMEGEERVCSQYLVSVCVRLFLERREKLMQQFMFQFREI
IVSDERIALMERFLASLASQMDEDPAWALVASEEQNILARLTIERAVVSQIYVHAMYPNG
EADISRDEVLNAHIHRLSDVITPNHRDLKIPRHYQYEQPWPSAQAEIRRLAAYKTPSDKV
ACVTRCSQTIMNLLALSSNKSVPAADDFVPVMVFVLIKANPASLLSTVQYVDSYFGERMK
GEDQYWWMQFVAAIEFIKTMDYGN
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccacccgtggggccagtgcccaggatcacgtcatgtcttccgcctttcgaggt
caccatcaccaccaccaccatcatcatcatcatcaccggagttcctcgtcggtcaagtcg
gatttgctcgagctatcgcggcatttgcggcaagaacggctctacgttcagcacgagaag
gagcagcttcaggaattgaaccaaaaggtcaaattggccggtgagaaactggcccacaag
gcctgggtggcccatcagcaacgcgagaatctggacacgctgattttgcccccgcgaaat
ggtcagacttttgagagctactcgcccgcggtctgttgtcaacgggccaatttgctggaa
cggaccgtgttccaggatgcatacaagcagctcaattaccgcgagatccattactcggag
ttcttgcacaacttacgggagaagcccaaatttttggccgtgtgcatgacggtgggcgac
aaggtgggctcggcccttatgagtgaaatcatctcgaccgtgttttccggactgtatggc
agctgtctcatggaggaggatgagcagttggtgttgaagttgttgcatcacttgctcaaa
cttcaactcacgtcggcgcccaatccgcggaagatgttgcgacaaggtcattgcgctttc
agccggctgtacaagtcgttcaccgaggagctcttctcggccaagatctttctcacctca
gctttgtatgatccgatcttacgtttgctgaccgaggacgagatctttttggatattgat
ccggccaaggccattattcggttcccacccagtgagcgaatcaaaaagtttgggcccgaa
gactcgccggaatttcaggtcaaactccaggaacatcggcgatttatcgtgggcaaactg
gaaacgctcaccaacgctttcataagtggcattcggagcaatcttcattgtttcccgccc
agtttggctcgcctcttgcgcacggttttttcgttactcatggcttcagggcgagccgaa
ccccgtgaagttaacgccgtgtgtgtggatctcatttttgatctcttcatttgtccggcc
atggtagacccgaatccggtgggaatcattgacacgcccatatcgtacatagcccgatcg
aacttgatgcaagtggcgcagatcctgcaagtgttgtgtctttggaagtgggaggagatc
gatccccgactgatggatctttactcacgattcgataaggagagcatgtcctccgttctc
gaggcaatgttggaagcgggcgagatgtcggaagaagcgcaggaaattaatgagatggct
ggaacctctcgtatggatctgacctctgaaggcagtcgattggctcgattggccctcctg
atgacccgatcgcaattggaagggctcatcgccttcttaaagagtcttcaacacaccaac
gatcatgggcaagagctcgacctgaacgagttgaatgggctcctatcctcgctccccgat
gccttacctggttccaatccagccaccatcaataacaacaacgaagccagtacatcgaag
cttggcaagcccgacgagtctttcatgaactcggattccctgcgcgcgaagaagcaggct
ctgtcggcccgattttccaccgctgtcaacacagtgtcgaatgtgagccgtcaagccgtc
attggagcgccccgacgaagcgaaagctttccgagcacccacaacgatgattccaatcaa
gtctcgcccaactcatccgccagcttgagtaataataacatgaataacgaaaatggaggt
gaagacctcagccgcttgaagcgggatcccgagactgttctggtgattcccttgctagat
agctcggaggccgagccgccaggttttttaaccgaagaacacgtcctcacccgaagtcgt
caagccagtcgtgtggtgaggatgaacttggccaacttgccgggaggtagtggttcggat
cccgccgaggaaggtgccaatttcatgtcaggggtggctggagaaaagcgaacgcgattc
tcactgtcccatgatgatggaagcattggcaacacatcggataacttggaagccatatcg
gaggcggcctcgaatcactcggtagactcgagcttagaagacgaagtggaacaagcagag
gatccgattgtggataacctctcagatatggtgtcagccaatgtaagtggccgtgggaca
cccaacgtgagcggtcgagacacgccctcgagccaagtgaccaatgaagacgaaatcaac
ccggcacgcgaagatgaggtggataatgccaatcaagaggttggtcctgagaatggaaat
cccgcacccgaacccatcaatgaacgtcatcaacctatgggacctcatggcgcgggtcga
ggcgcacaaggtggcaatcaaaatattgtacgaccccgaccgatgatggggggaggcggt
cgaaagagtggagaacctgatcttgaagaaaaattcggtagattcgagatcaagccaccg
cctcggccttcgaatgccactgtgggtggaggaccctcaagtgagcaaggcgacgaaact
cgttccatggtctccgacacttggtccactgatgttttgtcaagtgatacggaaaccact
accggtgatggggatcgatctggaattcccggggatttggaagagttagcaaggaatcgg
ctactggacgaacttgtagttcccccggcatccgctggatccttgagcaatgcgtcgagc
aatctgcttgatattgttgagactgcttccgaggcatggtccatggatgttttggcttcg
gatagcgagagtttgcgtctcggggacctggataacgacgatgcgggaagcgttgctcgg
tccgatgacactcgattcactgacgatacaacgagaagcgatcctgagacgctccttgat
attggaggatcttccagcaaattccgtgtcaaagatgatcccgcgtctctcaaaggcaat
ctgttgagaccatcccgggaagcagccattgaacaatgggctcggcaatccagtgctgga
cgaggaaccccgccccataacctcgtgggtagtggctcacttccacgccgtggtagtgac
tcctccggaatctcctttgaagcagctcgagcagctaaaagaggaaatcaagcagtatcc
gaaggcagtattcttaaaaagtccacgtccaggggagttgttcccattggtggcccatct
acatcagaggaatctagcgaggccattgccaacttgacttcccatctgagtgtggcaagt
atcgcttctagttgtgagagctccggcgactctggagaggggaagtcaagatccaattcg
actgtggcctccctaccgacaggaggtgcggtaatcaattctcagcctagtcttttagac
tcggacaaccctccattgatcccgcaacagggaggccgaagtgcaccttcgtcgtcgact
ggtgcaattccaaaaagtataagcttcgacaaggccgtgtatgatgcggcatttgatagc
gatcacgcaaaaggagggcagcataagcgtggcggagatcggagtttcttcaagagtttc
aaattacccaagattggtcgaaatcgaggtgggggcaatgccagcttgggcaccatgggc
ggcccattggttagccgaagtggctcgatcaaatcggacgagtacttacgctcttccgag
agactcacgagtgatgattcattcaacattcccgaacacgaagaagggcccatgttacgc
cgggtggcatctgatgaaacttctgatgacatattggccaagtatcggaagaaagccgcc
gcccaagtggattctgcccctgattcaacgacctccaacgatgccgtggatggaggcgga
gatttgagcatgaatgaagagcaagacgagcgactcgtgattgacccttcgaacatagaa
ggctcctacgccttccaagatgccaagaggaaattgaggctcatgttgtcagatgcggat
attaccactttgtccaatttgcccatcagttccatgaaaaagatggatggacgcgggagc
aatggtgcggcagtgcaaaataagaatagtaacaatcatcctcaacagccccaccaagat
aacgagattgtctggttcctccgggttcaattggcggaatcacacaacttgcaagatcga
agccgaatcgcgcaattgcacgagaccttacgttgtgtcgaactctttgactcggagggt
tgccggaaattggtccgatcccttcgagacgattacaagcgtcgtgctccctacttgaac
taccttttaagaagtcgccagggactcctgtccacgttggctcatcaaaagacccttttg
ggtcgcatggagggcgaagaacgtgtttgctctcaatatcttgtctccgtgtgcgtgaga
ctattccttgaacgtcgcgaaaagctcatgcaacaattcatgttccaattccgggagatc
attgtgtcggatgagcgaatcgctctcatggagcggttcctcgccagtttagcctctcaa
atggacgaagaccctgcgtgggctttggtggcgagtgaggagcaaaacattttggctcga
ctcaccattgaacgagccgtggtcagtcagatttatgtgcatgctatgtatccaaatggg
gaggccgatatctctcgggacgaggtcttgaacgcccacattcaccggttgtcagacgtg
atcacgcccaaccaccgcgaccttaaaatcccgcgtcattaccaatacgagcaaccttgg
ccgtctgcccaagccgagattcgccgattggccgcatacaagacaccgagtgacaaggtc
gcttgtgtgacacgttgctcacaaacgatcatgaatctgttagccttgtcctcgaacaaa
tccgtgccggctgccgacgatttcgtgccggtgatggtgtttgttctaatcaaggccaat
ccggctagtcttttatcaacggttcaatatgtggacagctatttcggagagcgcatgaag
ggcgaagaccaatattggtggatgcaattcgtggccgccatcgagttcatcaagaccatg
gactatggaaattaa
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integrated database retrieval system
