Tigriopus californicus (tidepool copepod): 131889116
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Entry
131889116 CDS
T09700
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tcf04147
]
131889116
00535 Proteoglycans [BR:
tcf00535
]
131889116
00536 Glycosaminoglycan binding proteins [BR:
tcf00536
]
131889116
Exosome [BR:
tcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
131889116
Proteoglycans [BR:
tcf00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
131889116
Glycosaminoglycan binding proteins [BR:
tcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131889116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Motif
Other DBs
NCBI-GeneID:
131889116
NCBI-ProteinID:
XP_059094107
LinkDB
All DBs
Position
10:complement(9534503..9538795)
Genome browser
AA seq
711 aa
AA seq
DB search
MATVLTRRQQIGGLSAVVILVVVVVVCLVGGTVGGWFQGDESPTQSFKDPDRLAPDSKQQ
RRTFRPLEGERKGIHSVLGFADDDELYSNPELDYPTSIQRLESNEPFGPQENNRHSSNRQ
ILTPKGEKGDRGPRGPPGMTVRGPPGPMGPVGPPGTESRASIFESSCDCNTSLLRQYVND
IRPKLIPGPPGPPGPIGQVQIGAQGPPGPNGPKGERGDVGKTGPEGLIGLKGQPGRDGLP
GLPGPPGPPGPHMMYTPSFNIMSHQQGQGGSQEAVQGPRGKVGPMGPRGDEGVKGDRGYP
GLKGDKGERGYEGPPGPPGPGGQDGMAGYPGNPGPSGPKGEPGPPGPAFGNNYNTYGGSN
QAQNMMARNLKGDKGEPGTTTIIHRASSSHAHGKFKKHHGGEHRHQLSDWAPSLDVLYSL
TDLEAESPERFPVGSLVFVQTLDSLLLRGQSSWAVIEKGRSVLEIPTPSQESNHLPPLWT
DETTSNLEISNPPLDSFGQPALKRFNPFSTTDKMAPDVNAYPSYPDSRPSSLRLIALNSP
RNGDVHGVLGVDYQCYRQAREAKLDGTFRAFLSAPGSVSKTLSGDNLQSIVRVQDRDLPI
VNLKGQELFPNWGAVFESRGKFDTQASIFSFNGQDVMKSMNWPRKLAWHGGGSWGEASHF
HCHAWSSASSLQLGMASNLEKGHLLDQRKVPCDHQFILLCIETTSHTLFST
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgttttaactcgacgccaacaaattggtggcctatctgctgtcgtgattttg
gttgtggtggttgttgtttgtttagtaggaggcacagtgggtggatggttccaaggggac
gaaagcccaacacaatcatttaaggatccggaccgactggctcctgactcgaagcaacaa
agacgaactttccggccactcgaaggcgagagaaagggtattcattctgttcttgggttt
gccgatgatgatgagctatattcaaatcctgaattggactatccaacttcgattcagaga
ctggaaagtaacgagccttttggtccgcaagagaataacaggcattcatcgaaccgacaa
attttgacgcccaagggagaaaagggagacagaggccccagggggcctcctgggatgaca
gtacgtggcccccctggacctatgggccccgttggaccaccaggcaccgaatccagagca
tcaatttttgaatcatcatgtgattgcaatactagtttattgcggcaatatgtcaacgat
atccgacctaagctcatccctggccctcccggaccaccggggccaattggacaagttcaa
attggagctcaaggtccacccgggcctaatggacccaagggagagcgaggagatgtgggc
aaaactggaccggagggtcttattggtctgaaaggccaaccaggtagagatggtttacca
ggcctacccggccctccaggcccccctgggcctcatatgatgtatacgccctcttttaac
atcatgtcccatcagcaaggtcagggtggatcccaagaagcagtccaaggaccccgtgga
aaagtggggccaatgggacccaggggggatgagggggtgaagggagatcgaggatatcct
ggtttgaagggtgataagggtgagagaggatacgagggccctccaggtccgccgggccca
ggaggtcaagatggaatggccggctatccgggaaatccgggtccctcgggacccaaagga
gaacccggcccgcccggcccagcttttggaaacaattacaatacctatggaggatcaaat
caagcgcaaaatatgatggctcggaacttgaaaggggataagggagagccaggcaccaca
acgatcatccaccgagcttcgtcctctcatgcccacgggaaattcaaaaagcatcatgga
ggcgaacatcgccaccagctttcggattgggcaccctccctggatgtgctctactctctc
actgatttggaggctgaatcccccgagcgtttccctgttggatctttggtgtttgtccaa
acattggactcattgcttcttcgtggacaaagcagttgggctgtcattgagaagggtcgg
tcggtactcgagattcccaccccatcgcaagagagcaatcatctgcccccgctttggacc
gacgagaccacgtcaaatctggagatttcaaacccgccgttggattcattcggccaaccc
gctctcaaacggttcaacccgttctccaccacggataaaatggctccagacgtgaacgcc
tatccgtcttacccagattctcgaccgtcttcgttgcgactgatcgcattgaactctccc
cggaatggtgacgttcacggagttttgggcgttgattatcaatgttatcgacaagcgcgc
gaagccaaactggatggaaccttcagggccttcctctcggcccctgggtcggtatccaaa
accttgagtggagacaatcttcagtccatcgtaagggtccaggatcgagacctcccgatc
gtcaatttgaaaggccaagagctttttcccaactggggcgctgtgttcgagtcccgaggg
aagtttgatactcaagcctctatcttcagcttcaacggacaggacgtcatgaagagcatg
aattggcccaggaaattagcttggcatgggggcggttcttggggcgaggcgtcccatttc
cactgtcacgcctggtcttcggctagctcccttcaattggggatggcttccaacctggaa
aaaggccacctcttggatcagcggaaagttccttgtgaccatcaattcattcttctttgc
attgaaaccacctcgcacactctgttttctacttaa
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