Tigriopus californicus (tidepool copepod): 131889297
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Entry
131889297 CDS
T09700
Name
(RefSeq) ATP-dependent RNA helicase vasa-like
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcf03036
]
131889297
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131889297
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131889297
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
zf-CCHC
ResIII
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
131889297
NCBI-ProteinID:
XP_059094364
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All DBs
Position
10:10079666..10083188
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AA seq
571 aa
AA seq
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MSDPWNTAAQDDPWGTGGGDSGPAEDANNNRPGGKGCFTCGEEGHRKSDCPQGGAGGGDR
KGCFKCGGDHMAKDCEQPDKCRRCGEEGHRVAECSQEPQTRVVDNEDGTQREIYVPKERT
EEQLFDTGISSGINFDKFDKIPVRSTGTDTPKPINDFSEANLRSLLLDNVTKSGYTRPTP
VQKYSIPIILGKRDLMSCAQTGSGKTAAFLLPILHSILESGCESNMGACPQTPQAVIVAP
TRELAIQIKDEARKFSQGSMLKCVVAYGGTSTGYQLGTLSRGCHVLIATPGRLNDFVEKG
KVSFENVRFLVLDEADRMLDMGFMPAVEKIVTSGSMPPKGERQTLMFSATFPGEIQAAAN
DFLVNYVFLTVGIVGGASSDVEQTVYEVEKFGKRDKLIDILDDKSPTDRMLIFVETKRNA
DFLATFLSGKGHPTTSIHGDRLQREREEALQDFKTGNKPLLVATAVAARGLDIKGVARVL
NYDLPKSVDEYVHRIGRTGRVGNLGKAYSFFDPSQDSDLAPGLVKILSESDQVVPEFLSN
FAAGAGAGFAGNDGFGGKDIRANDTEDADEW
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacccgtggaacaccgcagcccaagacgatccctggggtacgggcggcggggat
agcggtccagctgaggatgcgaataacaatcgaccgggcggcaaaggctgcttcacctgt
ggggaggagggtcatcggaagagcgactgtccgcaaggcggagctggaggcggcgatagg
aagggctgtttcaaatgcggcggggaccacatggccaaagattgcgagcaaccggacaag
tgtcggcggtgcggcgaagagggtcatcgcgtggccgaatgttcgcaagaacctcaaacc
cgcgtggtcgacaacgaagatggcacacaacgcgaaatttacgtgcccaaggaaagaaca
gaggagcagctcttcgacacgggcatctcttcgggcatcaactttgacaagtttgacaaa
attccggtcagaagcacaggaacggacactcccaaaccaataaacgatttctcggaagcc
aatctgagatcacttctcttggacaatgtgaccaaatctggctacactagacccacacct
gttcaaaaatattcgattccgatcattctgggcaaacgcgacttaatgagttgcgctcaa
actggatctggtaagacggctgcgtttctcttgcccatccttcattccattctggaatct
ggatgcgaatcgaacatgggcgcctgtccgcaaacgccacaagctgtgatagtggccccc
accagagaactggccattcaaatcaaggacgaagcgagaaagttctcgcaaggatcgatg
cttaagtgcgtcgtagcgtatggagggacatcaactggttaccagttaggaacgctcagc
cgaggctgccatgtcctcattgccacgcctggccgtcttaatgactttgtcgagaaaggg
aaagttagctttgaaaacgtcagattcttggttttggacgaagctgaccgaatgttggat
atgggtttcatgcccgccgttgaaaaaattgtcaccagtgggtccatgcctccgaagggt
gagcgacaaaccctgatgttttctgctaccttccccggggaaatccaggccgccgccaat
gattttttggtcaactacgtgttcctgaccgtcggtattgtgggaggagcaagctcagat
gtggaacaaactgtctacgaagttgagaagttcggaaagcgggataaattgattgatatt
ttggacgacaagtctcccaccgaccggatgcttatttttgtcgaaacaaagcgaaatgcc
gacttcttggctacattcttgtctgggaaaggccatcctaccacctcaattcatggagat
cgccttcaacgcgaacgggaggaagccctccaagattttaagactggtaacaaaccccta
ttagtggctactgccgttgctgctcgtggtttggacatcaagggtgttgccagagtgctt
aattacgatcttcccaaatccgtggacgagtatgtccacagaatcggtcgaactggacgg
gtgggaaatttgggaaaggcttactccttctttgatccgtcccaagattctgacctcgcg
ccgggtctggtcaaaattcttagcgagagcgaccaggttgtgcccgaatttctatcgaac
tttgccgctggagccggagctggatttgctggaaacgacggctttggagggaaagatatt
cgtgccaacgacactgaagatgccgatgaatggtaa
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