Tigriopus californicus (tidepool copepod): 131889449
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Entry
131889449 CDS
T09700
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131889449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131889449
03036 Chromosome and associated proteins [BR:
tcf03036
]
131889449
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
131889449
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
131889449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
131889449
NCBI-ProteinID:
XP_059094527
LinkDB
All DBs
Position
10:complement(7770732..7778365)
Genome browser
AA seq
1896 aa
AA seq
DB search
MFGQKSAFASPATNTFGAPQQSTPFGAPAPTNSFGAAPNVTPFGATSFGQPAQNTMGGFG
APNVAAGQTGGGLFGAASNTGQPTGGGLFGSSTANNTTAFGAAPNTGFAGASFGAGSAFN
KPATGFGAGSAFGQTNPTNTGGGLFGSTAPNTSTGMFGQPAQPTNTFGATASPFGAAGGF
GATNMPNGTTIKFNPTTGTDTMLKSGVTTNINIRHQCITCMKEYEAKSIEELRFDDYAAN
RKGGGAQTMGGMGQPTGGLFGATNPQPGIGGGGFFGSTPASTQGGSMFGQQAKPLFGGTT
GFGATTSASTGFGATNTFGATSGGLFGAAKPTGFGAPTPQAGFGGGFGQPTTTSASGGLF
GQQQKPAFALGGTPATSQSGGLFGSSTGGFGQTTQSAFGATNTGFGAPLQGGLGNTGGGL
FGQQNKPAGFGGFGGTTTSSAPAFGGGFGTNTATQAAPFGQTKPAFGFGAPAGNAAPSFG
FGTNTQQPQASGGMFGQQKPATLSFGGSTTMGQAPLGGTSFGGGFGAANNATGGGMFGTA
PQNKPGGMFGSTGSTFGAPTGGAFGSTLGAPSAFGTGMAPSYGAPNLGGMMGNTQPQAPA
SNANAIQQRLIQLASSPYGDNPLFKNLLQDSGKREEILKPINPASQKALDSNQYKVSPHR
NIKGKAKPINGLANRSAIFDGLEDDDVNTSSEMFVPRSSVKKLSLKAKSPASMPQSNGQQ
NQKEEKSINDTSVVSPANNQSVEESLNLPQVKARGDGSNNMSNVSVIDDSFMVLNPKKSK
SKVASDKSDENNSSECSETGEDESENNPCGIRLARKGYYTMPTLAEMGTMVDAKGQCQVE
NFTVGRVGYGNIFFPGVTNVMGLNLDEILFIRYKEVIVYPDETKKPPQGEGLNKKAQITL
DKVWPVDKTSRDNVTSPRKLAEMNYEERLQKACLKLGARFVEYRPETGSWVFKVEHFSRY
GLDDSDEDEPSKEVKKIKTGVPVKTILESKNPRGDVQTTAAVVHAENTTNEEGEGPSPVS
NEVARRQTRDPSAKDRSLSSDHDRSDLGTSRAVSPPAEQLARIRASAPKVMMMKAALFDD
DEEFMDLSGSKASKARPVILEARKTVLDQTDSLVEDIAHSLLMGSTSQGGPSAAASLLRS
RFLMDPARNESTNSMLLSTASYTPSKRIPTYTLHSAYDSYVTLPNSGSSDKVKIIIPKHI
DQLPSLTRSVLANRWKVFADSGLFMSRSFRVGWFTPLRLTNIGYTPGMRGQTKPSFSQVG
LEHVSTSCFGNADDVQIQSIEGWLQSNLEVSNLSFEKPGEDFPKFSSKDGVDTLHSHVKE
AYEQLSRQKSANEAFGRSMEAYEQLSRQKSANEAFGRSMKHFKQVFDLCEVLWGRVTEQQ
RYEPDSHEITMKRREGLSKWLHDAVGHLVKRNIERAKARGDHVDEVLALIEGHNVNEACE
KAQSQGDHFSALLIATTGGNNTLNGQMVLQQLEKWQEMECDKHLKSNRLRLYAILAGIPT
WAGTDTNVNVCQDLDWKQALAMEFWYLTSPVASIEDALLAYEDAFGGLQDNYSREPTPDY
FNGQMDGRTFDVSYHLLKLYTNRSHPLESILTPATHTSDCLDYRLAWLLAKVLRSVGYNH
LSKEKEDELHLSFGSQLEDLGLWHWSVFALLHLADPDHRKQTIIDTITRHVKLANEDSEV
RETFLHERLSVPIPWIAEAKATKAAFMRNPKDQAYYLIKAKFWAEAHRVIVTQVAPEAII
NEDYEYLMLLLSQLCSEDICSSIVDWNVQGKVFFDFISVDSDVKRLVNNQDPETLNYEIE
RLRPIIGSLANRISSLRTETAKERLCRAEIAKRVAHLMRAIFSLDTANKTGGDGSLGAGP
SRVLAEHLSQLPLPEDYALQELRTLTRNYMMEIIES
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atgttcggccagaagtcggcctttgcctcgccggccaccaacacgtttggtgcgcctcag
caatccacgccattcggcgcaccggcccccactaactcgtttggggcggcgcccaatgtt
acgccattcggagccacttcttttggtcagcccgctcagaacaccatgggtggctttggt
gcgcccaacgtggccgccggccagacgggcggtggcctctttggcgccgccagtaatacg
ggtcagcccacagggggaggtctctttggctcgtctacggccaataataccacggctttt
ggagcggctcccaacacgggattcgctggagcctcattcggggccggatcggcctttaac
aagcccgctacgggcttcggtgcgggctcggccttcggtcaaactaatcccaccaatacg
ggtggcggtcttttcggttcgaccgctcccaatacgagcacgggtatgtttggtcaaccg
gctcaacccacgaatacgtttggcgccacggcctcgccttttggcgcggctggtggattt
ggcgccaccaatatgcccaatggtaccacgatcaagttcaaccccaccactggcactgac
accatgctcaagtcgggcgtgaccaccaatatcaatattcgccatcagtgcattacctgc
atgaaagaatatgaagccaagtcgatcgaagagttgcggtttgatgattatgcggctaac
cggaaaggcggtggagcccagaccatgggcggcatgggacaacccaccggagggctcttt
ggcgccactaacccacaacctggcattgggggtgggggattttttggctcgacacccgct
tccacgcaaggtggttccatgtttggtcaacaagctaagcccctatttggcggtactacg
ggatttggggccaccacctcggcctccactggatttggtgccactaacaccttcggggca
acgtctggcggattgttcggggcggctaagcccaccggatttggcgcacctacccctcaa
gccggattcgggggtggtttcggccaacccaccacgacctcggcgtcgggtgggctcttc
gggcagcagcaaaaaccagcttttgctttaggaggcacgcctgccacgagccaatccgga
ggtttattcggatcaagtaccggtggatttgggcaaaccacgcaatcggcctttggggcc
acgaacactgggtttggagcgcctcttcaagggggcctgggcaacacggggggaggtctc
tttggtcaacaaaacaaacccgctggctttgggggatttggcgggaccaccacgagctct
gcccccgcatttggaggcggatttggtaccaacaccgctacgcaggccgctccatttggt
caaactaaacccgcctttggctttggtgctccggcgggcaatgccgctccctcgtttgga
ttcggaacgaacactcagcaaccgcaagctagtggaggtatgtttgggcaacagaagccg
gctactctctcttttggagggagcaccaccatgggacaggcgcccttgggcggaacatcc
tttggtggtggctttggggcagccaacaatgcgacagggggaggaatgtttggcacggca
cctcaaaacaaacccggaggcatgttcggttccacgggatccacttttggcgcgcccaca
ggaggagcgtttggttccactttgggagctccatcggcctttggcacgggaatggctcct
agttatggtgcgcctaaccttgggggaatgatgggcaacacgcagccccaagcccccgcc
tccaatgctaatgccattcaacaacgattaatccaactcgcttccagcccctatggagac
aaccctttattcaagaacctgttgcaagactcaggcaagcgcgaagagatcctcaagccc
atcaatcctgcttcgcagaaggccttggattccaatcagtacaaggtatcccctcatcgt
aacatcaaaggcaaggccaaacccatcaacggattagccaatcgtagtgccattttcgat
ggcttggaagatgacgacgtgaacactagtagtgaaatgtttgttccccgctccagtgta
aagaagctatctttgaaagccaagtctccggcaagcatgcctcaatccaacggtcagcag
aatcaaaaagaagaaaaaagcataaatgacacgtcggtggtgagtcctgcgaacaatcaa
agtgttgaagaatctctcaacttacctcaagtgaaagcccgaggagatggttccaacaat
atgtccaatgtgagtgttatcgacgattccttcatggtcctcaatccgaagaaatccaaa
tccaaggttgcgagtgacaagagcgatgaaaacaatagctcggaatgctcagagacgggc
gaagatgagagtgagaacaatccttgcgggattcgattggcacgtaaaggctattatacc
atgcccaccttagccgaaatgggcacaatggtggatgccaaaggtcaatgtcaagtggaa
aatttcacggttggtcgggtcggctacggcaacattttctttcccggggtgacgaatgtg
atgggcttaaacttggacgagattctattcattcgttacaaagaggtgatcgtctacccg
gatgagaccaagaaacccccgcaaggtgagggactcaacaagaaggcacaaatcactctg
gataaagtctggccagtggataagacttctcgcgataatgtaacctcgcctcgtaagcta
gctgaaatgaattatgaggagcgtttgcaaaaagcctgtctaaaattgggagccaggttc
gtggaatatcgacccgaaactggttcctgggtgttcaaagtggaacacttctcgcggtac
ggcctagatgactcggatgaagatgagccaagtaaagaggtgaagaaaatcaaaactggt
gtgccagtgaaaaccattcttgagagcaaaaatccacgtggagatgtccaaaccacggca
gccgttgttcacgctgaaaatactaccaatgaggaaggagagggaccttcgccggtgtcc
aatgaagtggctagaagacaaacccgtgatccatctgccaaggatcgttctctatcgtcc
gatcacgatcggtcagacctgggaacatcccgcgccgtttccccaccagccgaacagctg
gcccgcattcgtgcttcagccccaaaagtgatgatgatgaaggcagctctattcgatgac
gatgaagagttcatggatttgagtggttcaaaggccagtaaggctcgtcctgtgatcctt
gaagcacgaaaaaccgttctagaccagacagattcactggtagaggacattgctcactca
cttttgatgggaagtacaagccaaggtggtccgtcggcggcggcctcacttttgcgctct
cgcttcctgatggaccccgctcgaaacgaatccaccaattccatgctcctctccacggcg
tcgtacacaccgtccaagcgtatccctacttacacgttgcactcggcatatgacagttac
gtgacattgcccaactccgggagtagtgataaagtcaaaatcatcattccgaagcatatt
gatcaacttcccagtctgacacgaagcgttcttgccaatcgttggaaggtgtttgccgat
tctggtctcttcatgtcccgttcctttcgcgttggctggttcacacccttgaggctgacc
aacattggatatacaccgggaatgcgaggacagacaaagcccagtttctctcaagttggc
ctggaacacgtgagcacttcttgctttggaaatgctgacgacgttcaaattcagtccatc
gagggttggctgcaatcgaacttggaggtctccaatctaagttttgaaaaacccggagag
gattttcccaaattcagttccaaggacggggtcgataccttacacagtcacgtcaaggaa
gcgtacgagcaattgtcgcgacaaaagtcggctaatgaagcatttggtcgatcaatggaa
gcgtacgagcaattgtcgcgacaaaagtcggctaatgaagcatttggtcgatcaatgaag
cacttcaagcaggtctttgatctctgtgaagtcctttggggacgagtgacggagcagcaa
cgctacgaaccggattcacacgaaatcaccatgaaacgaagagaaggtctctcgaaatgg
cttcacgacgccgtgggacatttggtgaagcgaaatatcgagcgagccaaagcccgtgga
gatcatgtggacgaggtcctggccttaatcgaaggacataacgtcaacgaagcctgcgaa
aaggcccaatcccaaggagatcatttctcggcgctccttattgctaccactggcggcaat
aacacgctgaatggtcaaatggttttgcagcagctcgagaaatggcaggaaatggaatgt
gacaagcacttgaaatccaatcgacttcgcctgtacgcgatcttggccgggatcccaact
tgggccggaaccgacacgaacgtgaacgtgtgccaagatttggattggaagcaagctcta
gcgatggagttttggtatttgacttcgcccgttgcatcgatagaggacgctctcctggcc
tatgaggacgcctttggaggcctccaagacaattactcacgagagccaacaccagactac
ttcaacggccaaatggacggcaggaccttcgatgtctcctatcatttgttgaagctctac
acgaaccgatctcatccattggaatcgattttgactccggccactcacacatcggattgc
ttggactacagacttgcttggttactggccaaagttttgcgatccgtgggctacaaccac
ttgtccaaagaaaaggaagacgagctccatctcagttttggtagtcaactggaggattta
gggctatggcattggtcagtgtttgccttactccatctggctgatcccgaccatcggaaa
caaacgataatcgacaccattactcgtcatgtgaaactagccaacgaagatagtgaagtg
cgagagacgttcctccacgaacggttaagtgtgccaatcccatggatcgccgaagccaaa
gccacgaaagcggctttcatgagaaatcccaaagaccaagcatattatttgatcaaagcg
aagttttgggccgaagctcaccgtgtgattgtgacgcaagtcgccccggaggccatcatc
aacgaggattatgaatacctcatgctccttctttctcagctgtgctcggaagacatttgt
tccagcatcgtggactggaatgtccagggaaaggtgttcttcgacttcatctcggtggac
tcagacgtgaaacgtctggtcaacaatcaagatcccgagactctgaactacgagatcgag
cggcttcgtccgatcatcggatcgttggctaatcggatatcgtcccttcggaccgagacg
gccaaagagcgtttgtgtcgagccgagatcgctaaacgagtggcccatttgatgcgtgcc
atcttttctttggacacggccaacaaaaccggcggcgatggctctttgggggccggtcct
tcccgtgtgttggccgaacatttgagtcaactcccactgcctgaagactacgcgctacaa
gaactacgaactttgacgaggaactacatgatggaaatcatagagtcctaa
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