Tigriopus californicus (tidepool copepod): 131889484
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Entry
131889484 CDS
T09700
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131889484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131889484
03036 Chromosome and associated proteins [BR:
tcf03036
]
131889484
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131889484
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
131889484
PBAF complex
131889484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
ATP-synt_D
DUF4407
ATPase
DUF6092
Motif
Other DBs
NCBI-GeneID:
131889484
NCBI-ProteinID:
XP_059094584
LinkDB
All DBs
Position
1:complement(13760324..13765627)
Genome browser
AA seq
645 aa
AA seq
DB search
MSLPNFRLAASQGVHSSGGSGSQPQTMTAGSPVSFNILKERLRSSPAASPMGGFLLQGGI
MRQQDEIKANPFVHGPYGNAAFNPQRMGSKAMGNQGAPKPPRAPEKPLLPFQRFSRKVWD
DVQAQHPDASLWEVGKMIGQLWRDLTDLERREINEEYEAEKQDYERQMVVYKSSPAYQAY
MQAKARNAPTIEDPEPRGVKGAERRIDIQPAEDEEDPDDGLSVKHVAHSRFMRNHRLIND
IFSESVVPDVRSVVTTARMQVLKRQVQSLTMHQKKLEAELTQIEKKYDEKKRKFLDSSND
FQKELKRHCTKAVSEDKYQNMVTDQVEKLKQEKEDRLKNGVPTPPSPGPQASEITGPSDN
RHVLQPVDENKVEEDGGPDGTTGSTDGAKSEDGANGEEGATNHKDGSKGPPAAAPEYTDM
ATNPGQPKPQILAGRPGPQMSAGPPNVTAPPSRVHSGTTPPPNVTAPPHSHPGPHPSYGA
PPPQQMMPPSYPPQQGYGPPPPPHGYPGYPPQGGYRPPGAPPGASPHGGGGPPHGGPPPP
SGPTPSSGPPPPPPHGYPHYPGYPHPPHPSSGAEGGYPPYPGGPPPHQQQALPPNAMGAP
LRPGAPGMPPPGAVGNPQMGGPRVGSPSEGGPGPNSGVPPPPAAQ
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcccaatttccgcctggcggccagccaaggcgtgcattcgagtggcggaagt
ggaagccagcctcaaacaatgacggctggttcgcccgtgtcattcaatatcttgaaagag
cgtcttcggtccagtcccgcggcttcacccatggggggtttccttcttcagggtggaatt
atgcgccaacaagacgagatcaaagccaatcctttcgtgcacggaccttatggcaatgct
gcattcaacccccaaaggatgggatccaaagccatgggcaatcaaggagctcccaaacca
ccaagagctcccgaaaagccattgctgccctttcaaaggttctcccggaaagtatgggat
gatgttcaagctcaacaccccgatgccagtctctgggaggttggcaagatgatcggacag
ctttggcgggatctcacagacctcgaaaggcgagaaatcaacgaggaatacgaagccgaa
aagcaagactatgagaggcaaatggtggtctacaagagctctcccgcttaccaagcttac
atgcaagccaaagcccgtaatgcccccaccatcgaggaccccgagccacgaggtgtaaag
ggtgctgagcgtaggattgatattcaaccagctgaggatgaagaagacccggatgatggc
ttaagcgtcaagcacgtggctcattccaggttcatgaggaaccatcgcttgattaacgac
atattttcggaaagcgtggtgcccgatgtccgaagtgtcgtaaccaccgctcgcatgcaa
gtgctcaagcgtcaagttcagtcattgaccatgcatcagaagaaattggaggccgaactc
actcaaatcgagaagaagtacgacgagaagaagcgcaaattccttgattccagcaacgac
ttccaaaaggagctcaagcgccattgtaccaaggccgtctccgaggacaaataccagaat
atggtgactgaccaagttgagaaactgaagcaagagaaagaggatcgcctcaaaaatggg
gtccctaccccaccttcacccgggcctcaggccagcgagatcacgggaccatcagataat
cgacatgtgcttcaacctgttgatgagaacaaggttgaagaagatgggggtcccgatgga
acaacaggatcaaccgatggagccaaatcggaagacggggccaatggcgaggaaggtgcg
accaaccacaaggatggctccaaaggaccaccagcggccgctcctgaatacacagacatg
gctaccaatccaggacaacccaagccacaaatactggctggtcgtcccggccctcagatg
tctgctggtcctcctaatgtgactgcgccgccttcgagagtccatagtggcacgacacca
ccacccaatgtcactgctccgccccactctcacccaggaccacatccgtcttatggggct
ccccctccacagcagatgatgcctccatcatatccccctcaacagggttatggacctcct
ccgcctcctcacggatatccgggttacccaccacaaggagggtaccgacccccaggggcg
cccccgggcgcatctccacacggcggaggtggtcctccccacggtggtcctccacctcca
tcgggtccaacgccatcatcaggacctcctcctcctcctcctcatggctacccacactac
cctgggtatccacatccacctcatcccagtagtggggccgagggtggatatcctccatat
ccaggaggtccccctccacaccagcaacaggccttaccgcccaatgctatgggagctcca
cttcgcccaggtgctccagggatgccacccccaggagctgtgggcaatccgcaaatgggc
ggtcctcgagttggatccccaagtgaaggtggacctggtccgaactcaggtgttccccct
ccccctgccgcacagtaa
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