Tigriopus californicus (tidepool copepod): 131889554
Help
Entry
131889554 CDS
T09700
Name
(RefSeq) DE-cadherin-like
KO
K27891
DE-cadherin
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tcf04515
]
131889554
Cell adhesion molecules [BR:
tcf04515
]
Cadherins
Cadherin related
131889554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Ig_Shg
CADH_Y-type_LIR
Laminin_G_2
Cadherin_FAT4_N
Laminin_G_1
RET_CLD1
EGF
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
131889554
NCBI-ProteinID:
XP_059094665
LinkDB
All DBs
Position
10:complement(5603269..5650303)
Genome browser
AA seq
1589 aa
AA seq
DB search
MRIPLTARGNQTPGLVSVLLVLLLWQFTPTLALTRHRHRREPLPGPQYFEGQITKRIKDE
QRSNEYKPKFLDCERYTPVVEEESPRDTRVIQVYAEDKDNNTVTYSIVSQHKKFTIDPKD
GWLSTSDIFNRDEPDREKLVHVTVKATDNGRPQLEDICTLAVKIKDKNDNSPVFDRASYD
VPIAQDTYTGTQVMRISATDVDEGDNQKITYTLDPVRIAGDIDYFKLNKLTGVVTLVNKL
DKPVGYVFQFKATATDAGSPPENATIDVTIEVKESSNKPPTFVDGPGPSITLTETYNDFS
KPIATYEARSNIPEDGTVFFQLVRGRTEQTNKDDTFRALASQSEPTAVHIYLAKPLEYEK
VSEYTLTLQVRNSPDLVAEALLTVQVKDENNQAPVFTNVESGKVLENDAAGTIAMQVSAV
DNDGTYPNNAVTYHISPRNPPDIRDKFSIDPKTGIVTTNQEFDREEQSVYALTIDAQDGA
SSALLQNGQPNVTPQKFRIAIADKNDNPPYFPQKLYRAEIPEDQDVGSKVIEVRASDKDE
EASVTAYQVVNGSVGNVFTIEEQTGFIRVAKPLDYEMIKKYYLTIGAYDGEYSSETSVEI
TILNVNDMKPEFKRDKYEVELFEENMPNYPSVTVSATDPDIDDPTVPQNITYYLDPDSQT
SRHFKINPQTGDIQVVKPLDRDMPNGFPVWTMYVFAKDENGGPTGIENYVELTVKLSDIN
DNAPILDMPDGLVWYENRGQGDVGVLRASDYDTEENGPPFTFSLDGNANHDIKQWFEVNQ
NNNGSYVLRALVTFDREKQKQYDIPINICDNKGMCDVSILPLIIGDENDNPMEAGSSEIF
VFNYEGLAPDTEIGRVYVNDPDDWDLPDKSFKFKDRQRWDGQFALDRNTGMITMRRGIRL
QGEITTFEIDFAVEDPKHNQVGRSAVEAKVKVVIQKIPKEAVIKSGSIRIKGPPEDFIRP
DANGYSKRDKFTTLMKRYLNATHFDVFTVLPAGKKDQMTDVRFAAHGSPYYKPERLEGVL
TKRKHDMMKSMGIEIQMIHIDECIYEGVHCEGGSCTNHLDISPEPVSIFTNTSSFVGVQA
RVMPHCGCAVPSPIVSSACDPNPCLNNGTCHSASRSNQYTCDCPANNPEFFGPNCERLAA
SFNGQGWSWHPGLPACGNSHLSFVFNTQMDVGTLLYTGPSPNNIVENVEDFMAVEIRKGR
PRMLVNFGSGTKTLELEQRVDDGKDHFLVIRWTNDTIQMELDQKTCSNEVSPARNQCFLQ
ITTHEWTHHYLNTNSPLHVGGVSFGGDRFSEISKSIGVTRTEMPDGEGFAGCIRNLTFNG
GGRNTLYDLGSPSDGEHFTPGCNDEFVQAVVAIGLNTNFLIGILVCLLAILIMVILLAVY
RRRRHVFGDKDMDCDIRENIINYEDEGGGEGDQTGYDLSVLRMMSDGTPALHMGDPKKMS
NFYNQQEPPPDIQTFLQTNKDRIDGDPDATPYDDLRHYAYEGDGNSNGSLSSLNSGTSDA
DLEFDYLHNFGPRFKKLADMYGEQPDSEDESDSDPEFDPHGYHPHNSHHPHASQHHSHHL
SNGMMGGGSGSSMPPPPKHPGGVPSESWC
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atgaggattccgttaacggcgaggggtaaccaaacccctggtctggttagcgtgctccta
gtgctcttattgtggcaattcacgcccactctggccttgacccgtcatcgacaccgtcgt
gagcctttgcctgggccacagtattttgagggccagatcaccaaaaggatcaaggatgag
caaaggtccaacgaatacaaacccaagttcctggattgtgagcggtatacgcctgtggtg
gaagaagaatccccccgagatacccgcgtgatacaagtttatgccgaggacaaggacaac
aatacggtcacgtactcgatcgtgtcccaacacaagaagttcaccatcgaccccaaagat
gggtggctttcaaccagcgacatcttcaatcgtgatgagcctgaccgagagaaattggtt
catgtgacggtcaaagccacggataatggccgaccgcaattggaggatatttgcacattg
gctgtgaaaattaaggacaagaatgacaactcgccggtctttgaccgagcttcctatgac
gtcccgattgctcaggacacttacacaggcactcaagtcatgcggatctcggccacggat
gtggacgaaggcgataatcagaagatcacgtacacactcgatcccgtccgaattgctggt
gacatcgattacttcaaactgaacaaactcaccggagtggtgactttggtcaataagcta
gacaagcccgtgggttatgtgttccagttcaaggccacggccaccgacgccggctcccct
cccgagaatgccaccattgatgtcacgatcgaggtcaaggagtcctcgaataaaccaccc
acgtttgtcgacggtcccgggccatccatcaccttaaccgagacgtacaacgatttttcc
aaacccattgcgacatacgaggcccgttccaatatccccgaggatggaacggtgttcttc
cagttggtccgcggtcgcaccgagcagaccaataaggacgacactttccgtgctttggct
agtcaaagtgaacccacggctgtgcatatctatctagccaagccgttggagtacgagaaa
gtttccgagtacacgctgaccttgcaagtgcgaaacagtccggatctggtggccgaggcc
ttgcttacggtacaagtgaaagatgagaacaatcaagcgcccgtgttcaccaacgttgaa
tcgggaaaagtgctggaaaacgatgcggccggcaccattgccatgcaagtatcggccgtg
gataacgatgggacctatccaaataatgccgtcacctaccacatctcgcccagaaatcca
cctgatattcgagacaagttctcgattgacccaaagaccgggatcgtaaccacgaatcag
gaatttgatcgcgaagaacagagcgtgtacgccttgaccatcgatgcccaagatggagcg
tcctccgcgctgctccaaaatggtcaacccaatgtgacgcctcagaagtttcgtattgcg
atcgcggacaagaacgataaccctccttacttcccacagaaattgtacagagcagagata
cccgaagatcaagatgtgggtagcaaagtgattgaagtgcgggcctcggacaaggacgaa
gaggcttcggttacggcctatcaggtggtgaatggcagtgtaggcaatgtgttcacgatt
gaagaacagaccgggttcattcgggtagccaagcctctggattatgagatgatcaaaaag
tattacctgaccatcggggcctatgatggcgagtactccagtgaaaccagtgttgagatt
accatcctcaatgtgaacgacatgaagccggagttcaagcgagacaagtacgaagtcgag
ctgttcgaagagaacatgcccaactatccgtcggtaaccgtctcggccacggacccggat
attgacgatccgaccgtgccccaaaacatcacctactatctggacccggacagtcagact
tctcgacatttcaaaatcaatccccaaaccggcgatatccaagtggtcaagcctttggat
cgagatatgcccaatggcttcccggtgtggacaatgtacgtctttgccaaggacgagaat
ggcggtcccactgggattgagaattacgtggagctcacggtgaaactttccgacatcaat
gacaacgctccaatcctggacatgcccgatgggttggtctggtacgagaacaggggtcag
ggcgacgtgggcgtgctccgagcttccgactatgacactgaggaaaacggacctccattc
accttttctctggatggcaatgccaatcacgatatcaagcagtggttcgaggtgaatcag
aacaacaatggatcctacgtcttgagggcattggtcactttcgaccgcgagaaacagaag
caatacgatatccccatcaacatatgtgacaacaagggcatgtgcgatgtcagtatccta
cccttgatcattggtgacgagaacgacaaccccatggaggctggtagtagcgagatcttc
gtgttcaattatgaaggcctggctccagatactgaaattggacgggtctacgtgaacgac
cccgacgattgggatctgccggataagagcttcaaattcaaggaccgtcaacgatgggac
ggtcaattcgccttagaccggaacacgggcatgatcaccatgagacgcgggattcgattg
caaggcgagatcaccacgttcgaaatcgatttcgctgtcgaggatcccaagcacaaccaa
gtgggacgatcggccgtggaagcgaaggtcaaagtggtcattcaaaagatccccaaggag
gctgtgatcaagagtggttccatccgcatcaaaggcccgcccgaggatttcatccgaccc
gatgccaatgggtactccaaacgggacaagttcacgactttgatgaagcgatacctgaac
gcgacacattttgacgtattcactgtcctgcccgcaggcaaaaaggatcaaatgaccgat
gtgcggtttgccgcccacggctcgccttactataaacctgagcggctcgaaggcgtgcta
acgaaacgaaaacatgacatgatgaagtctatgggaatcgagatccaaatgatccacatt
gacgaatgcatttacgaaggcgtccattgtgagggcggatcgtgtacaaaccacttggat
atctctccagagcctgtgtccattttcaccaacacctcgtcgttcgtcggagttcaggca
cgggtaatgccgcattgtggttgcgccgtgcccagtcccattgtgtcgtccgcatgcgat
cccaacccgtgtttgaacaatggaacgtgtcactccgcttcaagaagcaatcagtacacg
tgtgattgtccagccaataaccccgagttttttggacccaattgcgaacgtctagccgcg
tcctttaacggccaaggctggtcttggcatccgggactacccgcatgcggcaactcgcac
ctctcgttcgttttcaacacccaaatggatgtgggcacacttttgtacacgggaccctca
cccaacaacattgtggaaaatgtcgaggatttcatggccgtagagatcagaaaaggccga
cctcggatgttggtcaattttgggagtggaaccaagacactagagctggagcaaagggtt
gatgacggcaaggatcattttttggtcattcgatggaccaatgacacgatccaaatggag
ctcgaccaaaagacgtgttccaatgaagtgagcccggcacgaaatcagtgcttccttcaa
atcacgacccacgaatggacccaccactatctcaataccaacagtccccttcatgtgggc
ggtgtgtcgttcggcggtgatcgattcagtgagatttcaaaatccattggagtcaccaga
accgagatgccggacggcgaaggattcgcgggttgcatccggaacctgacattcaatgga
ggtggacgaaatactttgtatgacttgggcagtccctcggatggggagcatttcactccg
ggctgcaacgatgagttcgtccaggctgtggtggccattggtctcaacaccaacttcctc
attgggatcctcgtgtgccttttggcgatcctcatcatggtgatccttctcgccgtgtat
cgacgtcgacgtcacgtttttggcgacaaagacatggattgcgatatccgagagaatatc
atcaactacgaggatgaaggtggcggagaaggtgaccaaactggctacgatctctccgtc
ctccgaatgatgtcagatggaacacccgctcttcatatgggtgatccgaagaagatgagc
aatttctacaatcaacaagagcccccaccagatatccaaacattccttcaaactaacaaa
gatcgcatcgatggggacccggacgccacaccctacgacgatcttcgacattacgcctac
gaaggcgatggtaattccaatggttccttgtcatccctgaattcgggcacttccgacgcg
gatctcgaattcgattatcttcacaatttcgggccccgcttcaagaagttggccgacatg
tacggcgagcagcccgactccgaggacgaatccgactcggaccccgagttcgacccgcat
ggatatcatcctcacaattcgcatcatccccacgcatcccaacatcattcccatcatttg
tccaacgggatgatgggcggtgggagcggctcttccatgcccccgcctcccaaacacccc
gggggagtgccatccgaatcttggtgctag
DBGET
integrated database retrieval system
