Tigriopus californicus (tidepool copepod): 131889576
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Entry
131889576 CDS
T09700
Name
(RefSeq) laminin subunit gamma-1-like isoform X1
KO
K05635
laminin, gamma 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131889576
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
Laminin_B
EGF_LMN_ATRN
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
131889576
NCBI-ProteinID:
XP_059094694
LinkDB
All DBs
Position
10:complement(8460626..8489496)
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AA seq
1681 aa
AA seq
DB search
MVHLWETHRSGPKTTPMWLTLWTGLVVGLAPTVKTSILDSQGTGSPCYALDAEGTQDLNQ
PQKCMPAFENVVFGKMVEVQPAQMTCGLRSRTEYCIQTHGIYRECDYCSDTEVDRRHPPN
YLTDIHEDFNQTWWQSVTMLEDVHTVNVNLTVNLGKSYEITYVRLKFHSPRPASFAVYKK
NRPNPAIPDENPDSGWIPWQYYSDTCRDTYKMPDSTSIIQPRDGKTKVNEDRALCTSTYS
DMTPLTGGNVAFSTLEGRPSGYNFEYSPELQEWVTATDIRISLQRLNTFGDEVFGDPKVL
RSYYYAITDYTVGGMCQCHGHATHCVNSTDDNMVTGSVCLCQHGTDGPNCETCLQDHWDV
PWRSATSQSANECKPCDCNGWSNRCRFNEQLYQERGRGGECLDCEGNRDGPNCERCRINH
FFSPIQDAFGRTPCEACNCDPTGSRNLQCSPEGQCECKPGVTGPKCDQCEANYWNFGSLG
CQSCGCYPDGSANNNPNCDTMTGDCYCKQNVEGQRCDRCKAGHFHIDKGNEFGCTPCFCY
GHTSECDLSGGFTQTVIRSDFSRSSEDWTSKEDQQDLPLKYDGINKYIGVQSSGYSSGPA
YFLAPPGYLGDQRASYNQDLKFKLRINDVGPRPSVEDVIIEGGGAKTTRITLSITDQNNP
QPSYEMQDYTYRLHENPEFGWSPRLSSKDFMAILANITGVMIRGTYVNHGVGFLDEIRLG
SAQRGGSGSPATWIERCNCPEGYQGQFCQLCQQGYHHNSGGPFARCIPCSCNGHADICDA
ETGECACRDNTSGHNCERCKKGYYGNALAGNPDDCQPCPCPDGGACMEIYGNPESPICIE
CPIGRRGPRCELCEDGYFGDPMGRLGPVRPCLKCDCNNNVDSNAIGNCNSTTGECLRCID
NTDGFNCERCKSGFFGDALALKKPGDPPSCQPCQCYPVGTNHNDETFLPICNGFTGDCSC
KPHVVGRDCDKCADGYFNLDSGIGCEACNCDTIGSFNASCHVQTGQCHCREGVTGPRCDM
CLPYHFGFSQDGCKPCDCDPTGSTDLQCDLITGQCPCRDKVEGRQCDRCMENTRTKDTGG
YGEKICEPCDDCYNLIEDATNEHRRNLAALDNLLQQIAENPEPVGGDFEYQLRQLQVTVK
STLADARINSQNEEGGTLRDRLENLRIKLEKVINLIMEADQEVQDAKNQGSEAQRDMMMA
KDIVERAREGLKLAQRQLDTQGQEALRRAQERSKKFGEESEKMTAIAREARTLADGQVED
ANEISSIARQAYDKSTEAYNLARDALEQQHRTANQITVLEVQIGDMGDKLRTVQSLASQT
LRDSTEAYNEALNIYQQANSLEIPEVDNAQLEDQTVKVSKESKRIQDDATRLLYENGQLL
TEAQDRRVQLEDLLRRADAQQRQIDEQLAEIDSHRARALDSVKTGNNVLKDAQNTLKTLK
GFESEVSENEETARAAMENINDIENMIREAEEKTAKARNDMVGADISAKLALNVATDAQN
IAGEASERAANISSQSEITLEQANGLADSARSLATKLAETKEVVESKEEIATEDEQAAIL
ALSKANEAQQKAARANQKLAQAKKELEEIAAILSRVVEPEPGLLEELARRVEEAEEQFQA
EDLDQRLKDLVSAKQRQTASVRDLERELNYLREESENIQAIRDSLPDFCPKSNELCLEDQ
C
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggtccacttgtgggaaacacatcggtcagggcccaagactactccaatgtggttgaca
ctttggaccgggctggtagttggtctcgcacctactgttaagacctccattttggattct
caagggactggttcaccttgttatgctttggatgcggagggaacccaggatctaaatcag
ccgcagaaatgcatgcctgcttttgaaaatgtggtgtttggaaaaatggtggaagtccaa
cccgcacaaatgacgtgcggtttgcggagtcgtacagaatattgcattcaaacccatggg
atctatcgagaatgcgattattgctcggatacagaagtagatcggcggcacccgcctaac
tatttgaccgacattcacgaggacttcaatcagacttggtggcagtcagtcactatgttg
gaagatgttcacactgtgaatgtcaatctcacagtgaatctgggaaagtcctacgaaatc
acgtacgtgcggctgaagttccattccccgcgtccagccagttttgcagtttacaagaag
aaccgcccaaatcctgcgattccggatgaaaaccctgattcaggatggattccttggcag
tactactcggacacttgccgcgatacctataaaatgccggattctacgtccatcattcaa
ccaagggacggaaaaaccaaagtcaacgaggatcgagctctgtgcacttccacttactcc
gacatgactccactgactggaggcaatgtggccttctccacattggaaggtcggccatct
ggctacaacttcgaatacagtcctgagcttcaagagtgggtcactgccacggatatcagg
atttctcttcaacgcttgaacacttttggtgacgaagtatttggtgacccgaaagtattg
cggtcctactactatgcaatcactgactacaccgttggaggaatgtgtcaatgtcacgga
catgctacccattgtgtcaacagcaccgatgataacatggttacggggagtgtttgcctc
tgtcagcatggaacagatggacctaattgcgaaacttgtcttcaagatcattgggacgtt
ccatggcggagtgccacttctcaaagtgcaaacgaatgtaaaccatgtgattgtaatggt
tggtccaatcgatgccgctttaatgagcaattgtaccaagagcggggtcgagggggagaa
tgcctcgattgcgaaggcaaccgcgatggacctaattgcgagaggtgcagaattaaccat
ttcttttcgccgattcaagacgcctttggccgaaccccttgcgaagcctgcaattgtgat
cccacaggatcaaggaacttacaatgttccccggagggccaatgtgagtgcaaaccaggt
gttacaggaccgaaatgcgatcaatgcgaagccaactactggaacttcggctccttgggg
tgccaatcatgtggatgttaccccgatggaagtgccaataataatccgaattgtgacacc
atgactggcgattgctactgcaagcaaaacgttgagggacagagatgtgaccgctgtaag
gctggccatttccacattgataaaggcaacgaatttggttgcactccttgtttctgttac
ggtcatacgtctgagtgcgatctcagcggtggatttacgcaaaccgtaattaggagtgac
ttttcccgaagtagcgaggactggacctcaaaggaagaccaacaagatttgcccctgaaa
tacgacggtatcaacaaatacatcggagttcaatccagtggatattcgtcaggcccggct
tacttcctagcccctcccggttaccttggggatcaacgggccagttataatcaggatctc
aagtttaagcttcgaatcaatgacgtgggaccaaggcctagcgtcgaggatgtcattatt
gaggggggtggggctaagacaaccaggataaccttatcaatcacagatcaaaataaccca
caacctagctacgagatgcaagattacacgtacagacttcatgagaatccggaattcggg
tggagcccgcgtctgagctcgaaggacttcatggccattttagccaatatcaccggagtt
atgattcgaggaacatatgtaaaccatggagtgggattcttagatgaaattcgacttggc
tccgctcagaggggcggatctggttctccagctacctggattgaacgatgtaattgtcca
gaaggctatcaaggtcaattctgtcagctctgtcaacaaggctatcaccataacagtgga
ggaccgttcgccagatgtattccatgcagttgcaatggacatgctgatatatgtgacgca
gaaacaggcgaatgcgcttgtcgcgataacacatcgggccacaattgcgaacgttgcaag
aaaggttactatggtaatgcactggcaggaaacccagacgattgtcagccgtgtccttgc
ccagatggaggtgcttgtatggagatttacggcaatcctgagagtccaatctgcatagaa
tgtcccatcggtcgacgaggtcctcgatgtgagttgtgcgaagatggctattttggagac
cctatgggtcgtctgggaccagttcgaccatgcctaaaatgcgattgcaacaataacgtg
gattctaatgccatcggtaattgcaacagcaccaccggcgaatgtctacgctgtatcgac
aatacggatggatttaattgtgagcgatgtaaatctgggttctttggcgacgccttggct
ttgaaaaaaccgggcgatccacccagttgccaaccatgtcagtgctacccggtgggcaca
aaccataatgatgaaactttccttccaatttgcaatggcttcacgggtgattgcagttgc
aaacctcacgtagtggggcgggattgcgacaaatgtgccgatggttatttcaacttggat
agtggcattggatgcgaggcatgcaattgcgacacaattggatctttcaacgcgtcttgc
catgtgcaaactggacagtgtcattgtcgagagggtgtgactggaccacgatgtgacatg
tgccttccgtatcattttggattctctcaagacggatgcaaaccttgcgattgcgatcca
actggatcgacagatctgcaatgtgaccttattacgggacaatgtccttgtcgagacaag
gtggaaggtcgacaatgcgaccgctgtatggagaatactcgcaccaaagacacaggaggg
tatggggaaaagatttgtgagccttgcgatgattgctacaatttaatcgaggatgcaacc
aatgagcatcggaggaacttggctgccctggataacttattgcaacaaatcgctgaaaac
ccagagccggtcggcggagactttgaataccagttgagacaacttcaagtcaccgtaaaa
tctacgttggccgatgctcggatcaattcccaaaatgaagaagggggcactttgagagac
agattagaaaaccttcgcatcaaactagaaaaagtcatcaacttgatcatggaagccgac
caagaggtccaagatgccaaaaatcaagggtctgaagcacaaagagacatgatgatggcc
aaagacatagtcgaaagagctcgagagggtcttaagttagctcaacgtcaattagatact
cagggacaagaagccttgcgccgagctcaagagcgatcgaagaagttcggagaggagagc
gaaaagatgaccgccatcgcacgagaagcgagaacattggcagacggccaagttgaagac
gccaatgaaatatccagcattgccaggcaagcttatgataaatctaccgaagcgtataac
ttagcccgggatgctttggaacaacaacaccgaactgccaatcaaattacggttttggag
gttcagatcggggacatgggagacaaacttcgaaccgttcaaagcctggcgtctcaaact
ctacgtgactccaccgaggcatacaatgaagcactcaacatttaccagcaagccaactcg
ctggagatccccgaggtcgacaatgcgcaacttgaagatcaaaccgtcaaggtgtcgaaa
gaatccaagcgaatccaagatgacgccaccagactcctttacgagaacggtcaattacta
accgaagctcaagataggcgtgttcagttggaggatctccttcgacgtgccgatgctcaa
caacggcaaattgatgaacaattggcagaaattgacagtcatcgggcgcgggcactggat
tctgttaagactgggaacaacgtcttaaaggatgctcaaaacactctcaaaactctgaaa
ggttttgaaagtgaagtgagcgaaaatgaggaaacggccagggcagcaatggaaaacatt
aacgatattgagaacatgatcagagaagccgaagaaaaaacagccaaagccaggaacgat
atggttggagctgacatttcggccaaattagctctaaacgtcgccactgatgcccaaaat
attgcgggcgaagcttccgagagggcggccaacattagctctcagtcggaaatcactttg
gaacaagcaaatggattggcagattctgctcgatctctagctactaagttggctgaaacc
aaagaagttgtggaaagcaaagaagagatcgccactgaggacgaacaagcggcaattttg
gctctgtccaaagctaatgaagctcagcaaaaagctgcccgtgctaatcaaaagctagcc
caagccaagaaagagctcgaagaaattgcagctattctttcaagagttgtggaacctgag
ccagggctattggaagagcttgctcgaagagttgaagaagcggaggagcaattccaagcc
gaggatcttgatcaaagattaaaggatttggtttctgctaaacagagacagacggcctca
gttcgagacctggaaagagagctcaactatttacgcgaggaatcggaaaacatccaagct
attcgggattcacttccagatttttgccccaaatccaacgaactctgcttggaagaccaa
tgttga
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integrated database retrieval system
