Tigriopus californicus (tidepool copepod): 131889660
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Entry
131889660 CDS
T09700
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like
KO
K18735
protein SMG9
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131889660
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
131889660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GBP
Smg8_Smg9
ABC_tran
MMR_HSR1
Dynamin_N
RsgA_GTPase
cobW
AAA_23
NB-ARC
AAA_22
AAA_28
DUF5906
AAA_16
AAA_33
AAA_29
DO-GTPase2
AAA_18
MeaB
Motif
Other DBs
NCBI-GeneID:
131889660
NCBI-ProteinID:
XP_059094792
LinkDB
All DBs
Position
10:11912228..11913824
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AA seq
493 aa
AA seq
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MADRGDTGKRRGDNRDRRGGVGRARHNGESHSRPTGGFRGGRGGRDRFRDRRDHSNSNED
TPRPVIVAQNPDRQREQHNVDFPTLEQTVTRPSVTPIKTLSPESETPTTDIRPTVDSLAG
VAESLERVRITPATAVRSATPNDDFQTAPPPANRSTSESSGSSLIPEKSLKFVDDGHQVT
DSLLAYLTDNPDFLVIGIVGAQGAGKSTLLNHLCRGRPTSTTNLFRVQGFEKQMLSEHCT
TGINVWVSPERVIYLDCQPLLSASVLDRTIQIDKKHSAEFNTAENTMEMHSLQHLAFFYN
ICHHVILIQDWFADSNVLRLLQTAEMLKPSSPAKTCESDEGSNQIVEHFPVLNFVQNKAQ
MNDFSPHQEKKMRDFYGRVFKDSQLHPSQPFLEILGEKKDAKKSVNLYILPDFDLEGPTN
VGNRPFSPEIKYKTSVDAMRRAILSQSRRPLTIVKQTERTWFQFAKDSWENIKNSSFFLE
YSRLLWSNKSQDL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggccgatcgaggcgatacaggcaagaggcgtggcgataatagagatcgtcggggtggt
gtaggccgagctagacacaatggcgagtctcacagccgtccgacgggcgggtttcgagga
gggcgtggcggacgggatcgatttcgagatcgacgggatcattcgaattccaatgaagat
acccccagaccggtgattgtggcgcaaaatccggatcgacaacgggagcagcacaatgtc
gatttccccacattggagcagaccgttacccgcccctcggtcacgcccattaagacgctg
agtcccgaatcggagacacctaccactgacatacgacccactgtcgattcgttggcgggc
gtggcggaatcgttggaacgcgtccgaatcacaccggccacagcagtgcgatcggccacg
cccaatgatgattttcaaacggctccgcccccggcgaatcgctccacttccgagtcatcg
gggtcgtccctcataccggaaaagagtctcaagttcgtggacgatgggcatcaagtgacg
gactctctattagcatacttgacggacaatccggatttcttagtcattgggatcgtgggc
gctcagggggcgggcaagtcgacgctgttgaaccacctctgtcggggtcgtccgactagc
acgaccaatctatttcgggttcaggggtttgagaagcaaatgctctcggagcattgcacc
acggggatcaatgtctgggtcagtcctgaacgcgtgatctatctggattgtcagcctctt
ctctcggcctccgtcctggaccgaacgattcagatcgataaaaagcactcggccgaattc
aacactgccgaaaacaccatggagatgcattccttgcagcatttggcgttcttttacaac
atttgccatcatgtgattctgattcaagactggtttgccgactccaacgtgctccgattg
ctccaaactgccgaaatgctgaagccatcctctccggccaagacctgtgagagcgatgaa
ggctccaatcagattgtggaacattttcctgttcttaatttcgtgcagaataaggctcaa
atgaacgatttttcgccccatcaagagaagaagatgcgtgacttctacggacgcgtcttt
aaggactcgcaacttcatccgtctcagcctttcctagagattttaggcgagaaaaaggat
gccaagaagagcgttaatctctacattctgccagactttgacttggaaggaccgactaat
gttggcaatcggccattctcacccgaaatcaagtacaaaaccagtgttgatgccatgaga
agagcgatcttgtctcaaagccgaagacccttgaccatagtgaagcaaacggaaaggact
tggttccaattcgccaaggactcgtgggaaaacattaagaactcttccttttttcttgaa
tatagtcgattattatggtcaaataaatctcaggacctttag
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