Tigriopus californicus (tidepool copepod): 131889721
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Entry
131889721 CDS
T09700
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131889721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131889721
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
131889721
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GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
131889721
NCBI-ProteinID:
XP_059094871
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Position
10:13860744..13861986
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AA seq
236 aa
AA seq
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MATATPMVGVRSGWPRGVPQPTANNTPSSSSSNYAKNPSLTLNRQINLYPLTNYTFGTKD
PLFEKDASVPARFQRMRDEFDQLGMRRSVEGVLLVHEHGLPHVLLLQLGTTFFKLPGGEL
NPGEDEVEGLQRLMTNTLGRAESGPQEWIIEDTIGNWWRPNFEPAQYPYIPPHITKPKEH
KKLFLVQLQDKAYFAVPRNYKLVAAPLFELYDNSQGYGPIISSLPQALGRFGFIYM
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgccacacccatggtgggtgtccgatccggctggcctcgaggtgtgcctcag
cctacagccaacaacacgccctcgtcctcttcttcgaactacgccaagaatccctcactg
acgctcaaccgtcaaatcaacctgtatccactgaccaattatacgttcggcaccaaggat
ccacttttcgaaaaggatgcctcggttccggcgcgattccagcggatgcgcgacgaattc
gaccaattgggcatgcgtcgctccgtggagggcgttttattggtccatgaacacgggtta
ccccacgttttgttactgcaattgggcacgaccttctttaagttgcctggaggcgagctc
aatcccggggaggatgaggtcgagggcctccaacgactgatgaccaacacgctgggacga
gccgagtcgggtccgcaggaatggatcattgaggacaccatcgggaattggtggcggccc
aatttcgagccggctcagtacccgtacattcccccgcatatcaccaaacccaaggagcat
aagaagttgttcctggttcaattgcaggacaaggcttatttcgccgtgccccgaaactat
aagttggtggccgctcccttgttcgagttgtatgacaattctcagggctacgggcccatc
atctcgtcattacctcaagccttggggcgtttcggctttatttacatgtag
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