Tigriopus californicus (tidepool copepod): 131889827
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Entry
131889827 CDS
T09700
Name
(RefSeq) ATP-dependent RNA helicase me31b-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131889827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131889827
03036 Chromosome and associated proteins [BR:
tcf03036
]
131889827
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131889827
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131889827
mRNA degradation factors
5'-3' decay
Decapping complex
131889827
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131889827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA
Motif
Other DBs
NCBI-GeneID:
131889827
NCBI-ProteinID:
XP_059095008
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All DBs
Position
11:5358660..5363391
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AA seq
445 aa
AA seq
DB search
MSAAVMAANTTSNLNTTEPKPAGDEVPSSTTNAGGMGWKSNLKIPAKDRRKRTTDVTDTK
GNEFEDFCLHRNLLMGIFEMGWEKPSPIQEASIPVALSGRDVLARAKNGTGKTGAYTIPI
LEQIDTTKEYIQGLIVVPTRELALQTSQIALELGKHLGVKVMVTTGGTNLKEDILRLYEK
VQLIVATPGRILDLMEKKVANMEKCKILCLDEADKLLSQDFKGLLDRLISHLPLTRQVLL
YSATFPLTVEAFMRKHMKDPYEVNLMDELTLKGITQYYAFVQEKQKVHCLNTLFSKLQIN
QSIIFCNSTQRVELLAKKITELGYSCYYIHAKMAQPHRNRVFHDFRAGLCRNLVCSDLFT
RGIDIQAVNVVINFDFPRMAETYLHRIGRSGRFGHMGVAINLITYEDRFDLHRIEQELGT
EIRPIPKVIDKSLYVAEFHTEEDEQ
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgccgtcatggccgccaataccacgtccaacctcaataccaccgaacccaag
cctgccggtgatgaagttccatcgagcacgaccaatgcgggtggtatgggctggaaatct
aatttgaaaatcccggccaaggatcgccggaagcgaaccactgatgtgactgatacgaaa
ggcaatgagttcgaagatttctgcctccaccgcaatttattgatgggtattttcgaaatg
ggttgggagaagccttcccccatccaagaggcgtccattcctgtagccttgagtgggcgt
gatgtcttggcccgggccaagaatgggaccggcaaaactggcgcttacaccattcccatt
ttggagcagatcgacaccaccaaagaatatattcaaggtttgattgtggttccgactcgc
gaattggcgttgcaaacgagccagattgccctggaattgggcaagcacctgggtgtgaag
gttatggtgaccaccggtggaaccaacttgaaggaagacatccttcgactgtacgaaaaa
gtccaattgatcgtggccacccccggtcgaatcctggatctcatggaaaagaaggtggcc
aacatggagaagtgcaaaatcctctgcttggacgaggctgataagttgctctcgcaagat
ttcaaaggcctcttggatcgtctgatttctcacttgcctttgacgcggcaagtcctattg
tattcggccacgtttccccttactgtggaagccttcatgagaaagcacatgaaagacccc
tacgaggtcaatctaatggacgagctcacactcaagggaatcacacagtactatgctttc
gttcaagaaaagcagaaggtccattgcctcaatacacttttctccaagcttcagattaat
cagagcatcatcttctgcaattccactcaacgcgtcgagctcttggccaagaagatcact
gaactcggctacagttgctactacattcacgccaagatggcacaacctcacagaaacagg
gtgttccacgacttcagggcagggctctgcaggaacctcgtttgctcagatttgttcact
cgaggtatcgatattcaagccgtgaatgtggtgatcaacttcgatttccctcgcatggca
gagacctacttgcatcgcattggtcgctctggccgttttggtcacatgggcgtggctatc
aatctcatcacctacgaagaccgatttgacctccatcgtattgaacaagaactgggcacg
gaaatccgacccatccccaaggtcatagacaagagcctctatgtggcagagttccacact
gaggaggatgaacaataa
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