KEGG   Tigriopus californicus (tidepool copepod): 131889918
Entry
131889918         CDS       T09700                                 
Name
(RefSeq) DNA ligase 3-like
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    131889918
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tcf03400]
    131889918
Enzymes [BR:tcf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     131889918
DNA repair and recombination proteins [BR:tcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     131889918
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N zf-PARP DNA_ligase_A_C LIG3_BRCT Macro RNA_ligase BRCT_2 mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 131889918
NCBI-ProteinID: XP_059095127
LinkDB
Position
11:complement(5246135..5250842)
AA seq 1073 aa
MSDNRYGADYAKRVANCKKCKAKIDKGQLRLAKITANNPFSDGGGDMKLYHHPQCLFDTF
KRARPATKIIEEIEDIEDFTDLTDEDKALLKQLIKDNPRATKGATPTKKAPPKPKATPPS
PLKSPSTPAPQSSDPPPPTRSVQGEPNHKDNGFRQFRKICARLAEEPSYNAKTEIIRQFL
TRGTDQTSFKGDLYVWVRLLLPGTVKRVYNLQSKQLVKIFSRIFGTIEEDMLEHLEAGDV
ADTIAEFFEQSKRVRPNSKANLTLHQVDQHLEALSQLTREDDQQTELTQIAEQCTSNDLK
MVIRLVKHDLRIHAGAKHILDGLHPDAYDAFNSSRNIMTVLDKVVAMRKSGQINGPLEVA
TALMHPVQPMLAMACKSVDMAFQKCPNGMYSEIKYDGERVQLHKQGSDFKYFSRSLKPVL
PHKVKHFKDFIPKAFPDGSDLILDAEVLMVDNKTGDPLPFGSLGVHKGAGFKDATPCLFV
FDCLYYNGQSLLQRPIQERRKHLLDHMVEVGNHIKFSEALLITKKQQLGDMIKRVLTQGL
EGLVLKDLKSVYEPGKRHWLKVKKDYLNDGAMADSADLVVLGAWYGSGNKGGIMSIFLMG
CLNHAKTKWHTVTKVHTGLDDNELERVQKELEPNMEKIKGDYSKIPNWLDCTRQMTPDFV
AKDPKCSPVWEITGAEFTKAEIHTASGISIRFPRITKQRKDKTWQTATSLGELKALFKAS
KENVDFDIDYSSESSPKKEVKSEPKSESPSAKPSPKINQEPLIPTVSSTNGRSFQKTHIK
AESSGFELTVKTGDLFTQPGANESLAHCISQDCKLGKGIAKLFREKFGRISEIQACNAGI
GEVAPLKEGQRFVYNLVTKAKYHQKPTYESLRQSLESMKTHALSNGVKRISMPKIGCGLD
GLNWNAVRTLIKNVFLSCDIQITIYFFGQDDQSSTPIKKVATSPMKKKTPTKRSSSDEDD
YNASTDEEDQKTAPPKVKVEKLDLPDLFVDMKIRLVEGVSLPKKMERFVVAYGGEILSDF
QVGEATHVIYPKGSRKKELLNNAPTTALHLKDTWLQDSIKRQKLAHIKSHTIA
NT seq 3222 nt   +upstreamnt  +downstreamnt
atgagtgacaatcgttatggtgcggattacgccaagcgcgtggctaattgcaagaagtgc
aaggccaagatcgacaaaggccagttgcgcttggccaagatcacggccaataatccgttc
agtgacggcgggggcgacatgaagctctatcaccatccccaatgtcttttcgatacgttc
aaacgggccagacccgccaccaaaatcattgaggaaatcgaggatattgaagacttcact
gacttgaccgacgaggataaagcgcttttgaagcagctcatcaaagacaatcctcgcgct
accaaaggtgccactcccaccaagaaagccccacccaagcccaaggcgacaccaccctcc
cctctcaaatccccttctacccccgcccctcagagctcagatccgcctccgccaactcgc
tccgttcagggtgaacccaaccacaaagacaatggatttcgacaattccgcaagatctgt
gctcgattggcggaagaacccagttacaacgccaaaaccgagattatccgtcaattcctg
acccgtggtacggatcagacctccttcaagggtgacttatacgtttgggttcgattgcta
ttgccggggacggtcaaacgcgtgtacaatcttcaatccaaacaattggtcaagatcttc
agtcggatctttggcacgatcgaagaggacatgctcgagcatttagaagccggggatgtc
gccgacacgatcgccgagttcttcgagcaatccaagcgagtccgacccaatagcaaggcc
aatttgaccttgcaccaagtcgaccaacacctcgaagccttatcacaactcacccgtgaa
gacgaccagcaaacggagttaacacaaatcgccgagcaatgcacgtccaatgatctcaag
atggtcattcgactggttaagcatgatttacggatccacgccggggccaagcacatcctg
gatggccttcatcccgatgcgtacgatgccttcaacagctccaggaacattatgaccgtg
ttggataaagtggtggccatgaggaagagcggccagatcaatggaccgctcgaggtggcc
accgctttaatgcacccggttcagccgatgttggccatggcttgcaagtccgtggatatg
gcctttcaaaaatgtcctaatggcatgtactcggagattaagtacgatggggagcgagtt
caattgcacaaacagggctcggatttcaagtacttttcgcggagcctcaagccggtttta
cctcacaaggtgaagcacttcaaggacttcatacccaaagcatttcccgatggttcggat
ctgatcctggatgcggaagtgctaatggtggataacaagactggcgatcccctgcctttc
ggcagtttaggcgtgcacaaaggtgcgggcttcaaagatgccacaccctgcttgttcgtg
ttcgattgtctttactacaacggccagagtctccttcaacgacccattcaagaacgcagg
aaacatctcctcgatcacatggtagaagtgggcaatcacatcaagttctccgaggcactc
ctgatcacgaaaaagcagcaattgggcgatatgatcaaacgagtcctcacccaaggtctc
gagggactggtcttgaaggacctgaaaagcgtctacgaacccggcaaacgccattggtta
aaggtcaagaaggactacttgaatgacggagccatggccgattccgcggacttggtggtc
ttgggagcttggtacggctctggcaacaaaggtggcattatgtccatcttcctcatgggc
tgtctcaaccacgccaagaccaaatggcacacagttaccaaagttcacacgggtctggat
gacaacgagttggagcgcgtccaaaaagagctcgagcccaatatggagaagatcaagggc
gattactcgaaaattcccaactggttggattgcacgcgtcaaatgacgccggattttgtg
gccaaggacccaaaatgctcaccggtttgggagatcaccggtgccgagttcaccaaagct
gaaatccacacggcctctggaatctcgatccgattcccaagaatcaccaagcagagaaag
gataaaacctggcagacggccacctcgttaggcgagctcaaggccttgttcaaggcctcc
aaagagaatgtggactttgacattgactactccagtgagagcagtcctaagaaggaagtc
aagtcagaacccaagagcgaatcaccatctgcaaaaccaagtcccaagatcaatcaagag
ccattgattcccaccgtgtcctcgaccaatggccggtctttccagaaaactcacatcaag
gctgaatccagtggattcgagttgactgtcaagaccggcgatctgttcactcagccgggt
gcgaatgagtcgttggctcattgcatcagtcaagattgcaagttgggcaaggggattgcc
aagttgtttcgcgagaagttcggccgcatctcggaaattcaagcttgtaacgcgggcatt
ggcgaggttgcgcccctcaaggaaggccaacgattcgtttataacctggtcaccaaggcc
aagtaccatcaaaaaccgacttacgagagccttcgacagagtctagagtcaatgaagacc
catgctttgagcaatggagtgaaacgcatttcaatgcccaaaattgggtgtggcttagac
gggttaaattggaacgccgtgaggacattaatcaagaacgtgttcttgagctgtgacatt
caaatcacgatctatttttttggacaagacgaccaaagtagtactccaatcaaaaaggtc
gcgaccagcccaatgaagaagaagacgcccactaagcgatccagttccgatgaggacgat
tacaacgcttctacggatgaagaagaccagaagacagccccgccgaaggtcaaggttgaa
aagctggatcttcccgacctgttcgtggatatgaagattaggttggtggagggtgtgagc
ctgcctaagaaaatggaacgttttgtggtagcttatggcggagaaatcttgagtgatttc
caagtaggcgaggctacccacgtgatttatcccaaaggttccaggaagaaagagctcttg
aacaacgccccgacaacggcccttcatctcaaggacacctggttgcaagacagtattaaa
cggcaaaaactggcgcatataaaatctcacacgattgcttag

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