Tigriopus californicus (tidepool copepod): 131890002
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Entry
131890002 CDS
T09700
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131890002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131890002
03036 Chromosome and associated proteins [BR:
tcf03036
]
131890002
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131890002
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
131890002
PBAF complex
131890002
GBAF(ncBAF) complex
131890002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
131890002
NCBI-ProteinID:
XP_059095234
LinkDB
All DBs
Position
1:complement(10010953..10014463)
Genome browser
AA seq
985 aa
AA seq
DB search
MAMEPKKNGGPVQKFWDAPEVIKALESVKSWLSRNAKKHVASDPPTAKSLSQLISQMIQF
QEDHLGKGAKSPPFTRLPIRLFLNFLPDGPLCHILAAMYKFKHEQAWRRFDLSSPSRKEA
NLQMCTKVEEALIEHEMHMLPKLFLRKELDKDDKDKVKEVAQRRGLTLTEDETEATHILY
PAAEGDTEIYCRPVFKKGDKCMVHFYRMPESRDNYGTCYPPEEKEPMEFGEEPIREEQYH
VSLEWLMEMEEYNEFMTEEDFEVDETGEPKLNELNLGYEEFSACEEKPLKKKGSSKRTRS
PSPSPTPKSSRKGKNNSGGGRSTSKKPRTLADDDDDDDLTQDLDDPTPDQSITEIKITSG
NAGKADMQTSRGGGSTYMDMDEKSQDSQRSMDREGRRNEEDKEENDDNVTEQTHHIIVPS
YSAWFDYNGIHTVEKRALPEFFNGKNKSKTPEVFISYRNFMIDTYRLNPTEYLTSTACRR
NLAGDVCAIMRVHAFLEQWGLINYQVDIDAKPTLMGPPPTSHFHLLADTPAGLQPVNPPK
TAQPSAARTMIDLDGKRVDRSSGQGDESDDKKKPSDIAIGTEFGLKTDQYDKKNAALKQS
TAAVASRDWTEQETLLLLEALEMYKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDP
AHGGGALGPLAFQPIPFSQAGNPIMSTVAFLASVVDPRVASSSAKAAMEEFARIKDEVPS
VIMDAHMKNVKEAVDDGSETPAQTGLEKSGIAGTAAEKEDTKDEEEKKEEEKKDGEKSTA
EKSDKKEEPMEVDPSAARKKDESKADRENQEKTENEKAKGKKAEVPQDRLIKDGQLQSAA
ATALSAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEY
QRQQLIQERQQFHLEQLRAAEFRARSAAQQKLSQESATAGSSAAPSPLAAGAVPSTAGPP
LGTAPAAPMASMAAPPPAPVPTGVK
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggccatggagcccaagaagaacggtgggccggtccagaaattctgggatgcgcccgaa
gtcatcaaggccttggaaagcgtcaaatcctggttgagtcgcaatgccaagaagcacgta
gcgagtgacccgcccaccgccaaatccttgtcgcagctcatctcgcagatgattcagttc
caggaggatcatctgggtaaaggcgccaaaagtccgccttttacacgattgcccatccga
ttattcttgaactttctcccggatggcccgctgtgccacattttggcggccatgtacaag
ttcaagcacgagcaagcttggcgtcgattcgatctgagttcgccgtcgcggaaagaggcc
aacctccagatgtgcaccaaagtcgaggaggccctgatcgagcatgagatgcacatgcta
cccaagctatttttgcgcaaggagctggacaaagacgataaggacaaggtcaaggaagtg
gctcagaggcgcggtttgacgctcaccgaggacgaaactgaggccactcacatcttgtat
ccggcggccgaaggcgacaccgaaatctattgccgacccgtctttaagaagggcgacaag
tgcatggtccacttttaccgcatgccggaatcgcgcgacaattacggaacgtgctatcca
cccgaggagaaagagcccatggaatttggcgaagagcccattcgcgaagaacagtatcac
gtcagcctcgagtggctcatggaaatggaggagtacaacgaattcatgaccgaggaggac
tttgaagtcgatgagaccggtgagcctaagttgaacgagttgaacctaggttatgaagag
ttctccgcctgcgaagagaagcccctcaagaaaaagggttctagcaagcgcacgcgttca
ccctcgccctcgcccacacccaaatcatcgcgcaagggcaaaaacaacagcgggggcggt
cgctcaactagtaagaaaccgcgaacgttggccgatgatgacgacgatgacgacctgacc
caggacctggatgatcccacccccgaccaaagcatcaccgagatcaaaatcacctcgggc
aatgcgggtaaggccgatatgcaaaccagtcgagggggcggtagcacctatatggacatg
gatgaaaaatcccaagactcgcagcggtccatggatcgtgagggtcgtcggaacgaagaa
gacaaggaggagaacgacgataacgtcaccgagcagacccatcacatcatcgtgccctcg
tatagcgcttggttcgattacaacggcatccacacggtcgagaaacgagcgttacccgaa
ttcttcaatgggaagaacaaaagcaaaacgcccgaagtgttcatctcgtaccggaacttc
atgattgacacctaccgcctgaatcccaccgagtacctgaccagcacggcctgtcgtcgc
aatttagccggcgatgtgtgcgccatcatgcgcgttcacgctttcctcgagcaatggggt
ctgatcaactaccaggtggatattgatgctaaacccactctgatgggcccacccccgacg
tcgcatttccacctcttggccgacaccccggctggtttgcagccagtgaatccgcctaag
acggcccaaccttcagccgctcgcaccatgatcgatttagatgggaaacgcgtggatcgc
tcttctggacagggcgatgaaagcgatgacaagaagaagccatcggacatcgccattggc
accgagttcgggctcaaaaccgatcagtatgacaagaagaatgccgcgctcaaacagtct
acggctgctgtggcatccagagattggaccgagcaggagacgttactcttgctcgaggct
ttagaaatgtacaaagacgattggaacaaggtctgtgaacatgtcggttcgcgcacccag
gatgagtgcattctccacttcctgcgcttacccatcgaggatccctacttggaagatccg
gcccacgggggtggagctttgggtccattggcattccagcccattccttttagccaagcc
ggcaatccgatcatgtccacggtggcctttttggcgagtgtagtggatccccgagtagct
tcctcctcggccaaagccgcgatggaggagtttgcgcggatcaaggacgaagtgccctcg
gtcatcatggacgcccacatgaagaacgttaaagaggccgtggatgacggctcggagacg
cctgcccaaacgggattagagaaatcgggaatagctggaactgccgcggagaaagaggac
acgaaagatgaagaggagaagaaagaagaggagaaaaaggacggtgagaaatcgaccgcg
gaaaagagtgacaagaaagaagagcccatggaagtagatccgtccgccgcccgtaagaag
gatgagtccaaggctgatagggagaaccaagagaagaccgagaacgaaaaagccaagggt
aaaaaagcagaggtcccgcaagatcgactcatcaaagacggccaacttcaatcggccgca
gccacagctttgagtgcagcggcagtcaaagccaaacatttggctgccgtggaagagcgc
aagatcaaatcgctagtggctcttttggtggaaacccagatgaagaaactcgagatcaaa
ctacggcattttgaggagttggaaacgatcatggatcgagagagggaagcgctcgagtac
caacgtcagcaactcatacaggaacgtcagcaattccacctggagcaactccgagcggca
gaatttcgggctcgctcagccgcacagcaaaagctctcccaagaatctgccacggccgga
agctcagccgccccgtctcctttggctgccggggcagtgccatctactgccggcccgccg
ctcggtactgcgccggccgctcccatggccagcatggccgcacctcctccggcgccagtc
ccaactggggtcaaataa
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