Tigriopus californicus (tidepool copepod): 131890024
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Entry
131890024 CDS
T09700
Name
(RefSeq) transcription factor IIIB 90 kDa subunit-like
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131890024
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
131890024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
BRF1
Zn_Ribbon_TF
Zn_ribbon_tTFIIB
Cyclin_N
Lar_restr_allev
Zn_ribbon_3
RB_B
Zn_ribbon_PaaD
DUF4503
Motif
Other DBs
NCBI-GeneID:
131890024
NCBI-ProteinID:
XP_059095275
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All DBs
Position
11:complement(5634449..5636999)
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AA seq
782 aa
AA seq
DB search
MNAPPHSALGVQGVVGGTPATPSASGGSAVKQPTCPHCGSGSIETDAARGDAVCTDCGAV
LETSLIVSDIQFEENAHGGSNAIGQFVSADQKGGGGLGLSALGGRGHISGVGRESREITL
RNARNKIRALGQQLALRQDRIEMAFNFFRMALSRNLTRGRKSTHVIAACVYITCRTEGTS
HMLIDFSDILQIDVYELGRTYLKLSQELCINIPAMDPCLYVMRFAHKLEFGDKTHEVSMT
ALRLVSRMKKDWIHFGRRPSGLCGAALLIAARLHTYNRTVGDVIKVVKVHESTLRKRLNE
FGETPASQLTLDEFMNIDLDAMTEEQDPPSYKAARKRDRERLQQLEAEDGDLDEQITELE
RIIERELAEKRARLGGPYARLARATSPTPSNQSDTLDDEERDAEQFITEQTLGSISEIVN
PEASSDSALMPPPPGSYGKCRPIESPGLGLKDTIQEYLMPSPSSSTHSSYSSMNSAKKEE
ALHGEADVEEELDLDGIDEDEIDSYIMSEHEIKFKTEMWLKVNAEYLKEKAEKEERERKE
EEEALKEGREIKKKKKTPKKPKVNMGGNQTALEAIEKIVQEKKISTKINYEVLRSLNMSY
TPMKPGGDGEADDEEDATESAHPSTPTSSSLKTTPKSASDQHPNTKSRDSNSLFGQSPIT
TPAAISQVLYSSGADEPPKSSGSASRKRNADDSKSSLSRTKSSKKLKPEKSKALEPEPIV
ETGPVEPVPLPEDEEEEFHEEEEEEEDLEPEDQILSAAELLSKHRGDDGQPDEYYGEEED
YY
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgcccccccattcagccctgggcgtccagggcgtggtgggaggcacgccggcc
acgccctctgcctccggtggatccgccgtcaagcaacccacttgtccgcactgtgggtcg
ggctcgatcgagacggatgcggctcgcggcgatgccgtgtgcacggattgtggggccgta
ctcgagacgtcgctcatcgtgtcggatattcagttcgaagagaacgcccacggcggctcc
aacgccattggccagttcgtgtcggccgatcagaagggcgggggcgggttgggcttgagc
gccttgggtgggcggggtcacatttccggggtgggtcgggaatcgcgggaaatcacgttg
cgcaacgcgcgtaataagatccgagcattgggccaacagttggctttgcgccaagaccgc
attgagatggcctttaatttcttccgcatggccttgagtcggaatttgacgcgcggtcgg
aaatccacgcacgtgatcgcggcttgcgtctatattacgtgtcgcacggaaggcacgtcg
cacatgctcattgacttctcggatatcctgcaaatcgacgtgtacgagttgggtcgcacg
tacttgaagttgtcgcaagagttgtgcatcaacattccggccatggacccgtgtttgtac
gtgatgcgattcgcgcacaaactcgagttcggcgacaagacgcatgaagtgtccatgaca
gccttgcgactcgtgtcgcgcatgaagaaggattggattcatttcgggcggcgaccctcg
ggtttgtgcggtgcggccttgctcatcgcggctcgcttgcacacctacaaccgcaccgta
ggcgacgtcatcaaagtggtcaaggtccacgaaagtacactccgcaagcgactcaacgag
tttggcgagacccccgcctctcaattgaccttggacgagttcatgaacatcgatttggac
gccatgaccgaggagcaagacccgccctcctacaaagccgcgcggaaacgcgaccgcgag
cgcttgcaacaactggaagccgaagacggcgatctggacgaacagatcaccgagcttgag
cgcatcatcgagcgcgagttggccgaaaagcgcgctcgtttaggcggtccgtatgcccgt
ttggcccgcgcaactagtcccaccccttcaaatcaaagtgacaccctggatgatgaagag
cgcgatgcggagcaattcatcaccgagcagactttgggctccatctcggagattgtcaat
cctgaggcctcgtccgacagtgccttgatgcccccgcccccgggttcttatggcaagtgt
cgacccatcgagagtccgggcttaggcctgaaagacaccattcaagaatacctcatgcct
tcgccgtccagttccacgcactcctcgtactcatccatgaactcggccaaaaaggaagag
gcccttcatggggaggccgacgttgaggaggagttggatctggacggtatcgatgaagac
gaaatcgatagctacatcatgtcagagcacgaaatcaagttcaaaaccgagatgtggctc
aaagtgaacgccgagtatctgaaggaaaaggccgagaaagaggaacgtgagcgcaaagaa
gaagaggaggccctcaaggaaggccgtgagatcaagaagaaaaagaagacgcccaagaag
cccaaggtgaatatgggcggcaatcaaactgcgctcgaggccatcgagaaaattgtgcag
gagaaaaagatctcgaccaaaatcaattacgaagtcttgcgcagtctcaatatgtcctac
actcccatgaaacctgggggtgatggtgaagccgacgatgaagaagacgcaactgaatcc
gctcatccatccacccccacctcttcatcgttaaaaaccactcccaaaagtgccagtgac
caacatcccaataccaaaagtagagacagtaactcgctctttggccaatcgcccattacc
actcccgcagccatttctcaagtgttatattcatccggagctgatgaacctccgaagagt
tcgggttcggctagtcggaaacgtaacgccgatgattccaaaagctctttgtcacggacc
aaatcgtcgaagaagttgaagcccgagaagagcaaagctctcgaacctgagcccattgtt
gagactggacccgtggaaccggttcctttgcccgaagacgaggaagaggaattccacgag
gaagaggaagaagaggaggacctggaacccgaggaccagattttatccgcggcagaattg
ctctccaaacaccgtggcgatgacggtcagcccgacgagtattacggcgaagaagaggac
tactactaa
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