Tigriopus californicus (tidepool copepod): 131890580
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Entry
131890580 CDS
T09700
Name
(RefSeq) ATP-dependent RNA helicase dhx8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131890580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131890580
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131890580
Spliceosome [BR:
tcf03041
]
Complex C
Other components
Step II factors
131890580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
SLFN-g3_helicase
AAA_19
AAA_22
Ploopntkinase3
NACHT
nSTAND3
AAA_16
AAA_30
Flavi_DEAD
T2SSE
ABC_tran
AAA_29
AAA_7
PhoH
nSTAND1
Motif
Other DBs
NCBI-GeneID:
131890580
NCBI-ProteinID:
XP_059095939
LinkDB
All DBs
Position
2:9961637..9964446
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AA seq
734 aa
AA seq
DB search
MLSFLSPGFYTPPNTPVDKDKRIDPGPLDLSRLNKSLSDIVNDKIKEAKARPLSTASSHV
MDPFNPVEDVGHRTDVLDMNSNYLNTPPENPKQRSDIQEARKRLPIYQFRSQFLNAVRNH
QVVVVVGETGSGKSTQMPQYLLESGFLRGKIAVTQPRRVAAVSVSKRVAKEMECRLGDQV
GYSIRFEDVSSPQTVIKYITDGLLLMDCLKDPTFSSYECVILDEAHERTLHTDVLLGLIK
KALKHRPELKVIITSATLDIRKFADYFQAPMIKIPGEMFPVAVEYLPVDHLTKNRPLWIK
AANPTLYLSEVILKVMEIHQNCPLPGDILVFVPGKEDVEQVCYVLSQILKQETVILFPVY
AALPFEVQCSIFAPAKSHVRKIVVSTNIAETSLTIDGIVFVVDSGLFKESVFDNGIESLK
TTMISKAQAEQRGGRAGRTAPGICYRMYTKGDFETLNLAATPAIHRIDFIATALQLKAMG
IHDICGFGFMDSPKPGRVKHALFRLRDLGALDRGFFVTELGFKMSVFPLSPNLSKVLLTA
ADMGCSDEVMTIVSMLSVNHHIFVRPPRFQKEADACKTCFNDFKGDHITLLNVFAAWIQN
EQSEEWSKENYVNQKELERALDIRSQLTTIMNGRNIPILSCGGRRLHHIRMVLSTGLPNN
MAYRDHMSHSKGVYRTMSGNNVVFIHPSSALFKRNPELVIFHETVTTSRTFMRIVSVCER
SWLSQSQRRVIIQF
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgttaagtttcctatcccccggtttttatacgcctccaaatacgcccgtggataaggac
aaacggatcgaccctggtccattggatctctctcgtttgaacaagtccctctcggacatc
gtgaatgacaagataaaagaggcaaaggcacgacctctttccactgcatcttctcacgtc
atggacccgttcaatcccgtcgaggatgtcgggcaccgaacggatgtcctcgatatgaac
tctaactatttaaacacccctccagagaaccccaaacaacgatcggatattcaagaggcc
cgcaagagattgcccatctaccagttccgtagtcaattcttgaatgcagtcaggaaccat
caggtggttgtggtggttggcgagacagggtctggcaagagcacccaaatgcctcaatat
ctcttggaatctggatttctacgaggaaagattgcggtgacgcagcctcgaagggttgct
gccgtatcggtttccaagcgggtggcaaaagagatggaatgtcgactgggtgatcaagtg
ggttattccattcgcttcgaggacgtgtcgagtcctcaaactgttatcaaatatatcacg
gatggtcttcttttgatggactgcctcaaagatcccaccttctcgagttatgagtgtgtg
attctcgacgaggcccacgaaaggacgctccacaccgacgtacttttgggtctcatcaag
aaggccttaaaacaccgtccggaattgaaggtcataatcacctcagccacgttggatatc
agaaagtttgctgattactttcaagcccctatgatcaaaatcccaggagagatgtttcct
gtggccgtcgagtatctaccagtggatcacttgacaaagaaccgacccctgtggatcaag
gctgcaaatcccacactgtatttatccgaagtgattctcaaggttatggagatccatcag
aattgccctttgcctggcgacattctggtattcgtgccaggtaaagaagatgtcgagcaa
gtttgttacgttttgtcccaaatcttgaaacaagagacagtgattctcttccccgtctac
gcggcattgccttttgaagtccaatgtagtatttttgctcctgccaagtcccacgtccgc
aagatcgttgtctccactaacatcgccgagacctctctcaccatcgatggaatcgtgttc
gtggtcgactcgggactattcaaggaaagtgtctttgacaatggaattgagtccttgaag
accaccatgatatctaaggcccaggccgaacaacgtggaggacgagctgggcgaacagct
cccggaatctgctaccgaatgtacaccaaaggcgatttcgaaaccctgaacttggccgct
acacccgccatacacaggatcgacttcattgccaccgcccttcaattgaaagcaatgggc
attcacgacatttgcggttttggattcatggattcgcccaaacctggccgagtcaaacat
gccctttttcgccttcgtgatcttggcgcactggaccgaggatttttcgtcactgaactg
ggattcaagatgtcagtgttcccgttgtcccctaatctctcaaaggttcttttaaccgct
gcggatatgggctgctccgacgaggttatgacgatagtttcgatgctgtccgtgaatcat
cacatcttcgtgagaccgccaagattccaaaaggaggcagacgcttgcaaaacctgtttt
aacgacttcaagggagaccacattacccttctgaatgtttttgccgcctggattcaaaat
gaacagtccgaggaatggtccaaagagaactatgtgaaccaaaaggaactggaacgggcc
ctcgatattcgctcccagctcacaaccattatgaatgggcgcaatatcccgatcctaagt
tgcggtggcagacgccttcaccacattcgtatggtcctctccactggattgccaaacaac
atggcttacagagaccacatgtcccatagtaaaggggtctatagaaccatgtcgggcaat
aatgtggtcttcattcacccctcaagtgcattgttcaagcgaaacccggaacttgtaatc
ttccacgagaccgtcactaccagcagaacatttatgaggatcgtttctgtttgcgagagg
tcatggttgtcacaaagtcaacgtcgagtgatcattcaattctaa
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