Tigriopus californicus (tidepool copepod): 131890622
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Entry
131890622 CDS
T09700
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit Pan3-like
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131890622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131890622
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131890622
mRNA degradation factors
3'-5' decay
Pan complex
131890622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
MMR_HSR1_Xtn
Hemopexin
Eplus_motif
Motif
Other DBs
NCBI-GeneID:
131890622
NCBI-ProteinID:
XP_059095997
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Position
11:complement(9659603..9664233)
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AA seq
741 aa
AA seq
DB search
MYLPSPLSGPPTAGALRAGSILAPGSAGSSPPPPNGGTASSPATALGLLNNGPLPQGSKL
MAYMNNRGPPPMMGSGSPHVNGSPAGSHELNTSQSIQALESKANLTGDDNRGLGRSSVQT
SVTATNINHIQEFVPASATSSTGSGSAGNGVMGLRQPHSSGGNGRLYSRSPVPSAHPAPG
NGADSEGSVARISPTSMTPEQQAALEAVATFSDGGTTYFFSGDEMPMSHPMSSQGLNSGT
STLLPDYSAYSGTPSFVANMRVRANIPGFLADSEIRIDILKRQQICWAQIDMDQHPGVPS
EVDNFKELCPLESVPQSPTMKNKSHTFGYYTTVYKAANMKTGVLVCLRRIHGYRLLNTKC
MMLVEQWRKLSHPNLVSLRQVFTTKSFGDHSMVFVYDLYPGAETLMEKHFSHPAQTGNAF
MDPFSGTDGTARPYSQQKNQMLRQQAMLTNNGLLAESVIWSYVIQLTSALRHIHSAGLAC
RTLDPTKILIINKSRLLLNCGGIFDVITFDAAASNPMGAMAHYQQEDLVSLGKIVLALAC
NSFLAIQRENLQTSMEIVTSTYSTDLRNLIMYLLTNPNRVKSVNDLMPMIGARFYTHLDA
AYARCDSVESELSKEVESSRLFRLSTKISTVVDRAELNGDFGWAEYGDRYMLKLFRDYVF
HQVMEDNRPWLDMAHVITCLNKLDAGSSERVCLMSRDEQNVLVVSYAELKLSLEQSFSEC
VQASRMPPNPSGHSGAMGSHY
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtacttgccttccccattgtctggtccgcccacggcgggggcactccgggccggatcg
attctcgctccgggatccgcgggctcctcgccccctccgcccaacggtggtacagccagc
agtccggccaccgctttgggtttactcaataacgggcccttacctcagggatcgaagtta
atggcctacatgaacaatcgaggtccaccgcccatgatgggatcaggctcccctcatgtt
aatgggtcgcccgccggatcgcatgagttgaacacctcccaatccattcaggccttggaa
tccaaggctaacctgactggtgatgataatcgtggcttgggtcgctcttcggttcaaacc
tccgtcacggccacgaatatcaaccatatacaagaattcgtaccggcctcggccaccagt
tccaccgggtccgggtccgccggtaatggtgtgatgggtctgcgtcaacctcattcctct
gggggtaatggtcgattgtattcccgctctcccgttccgtctgcccatcccgcccctggc
aatggggcagattcggaggggagtgtggcccgaatctcgcccaccagcatgacacccgag
cagcaagccgccttggaggctgtagcgacgtttagcgatggaggcaccacgtactttttc
tcaggcgatgaaatgcccatgagccaccccatgtcctcccaagggttgaatagcgggaca
tcgactttgttacccgactactcggcttattcgggtacgcctagctttgtcgccaacatg
cgagtgagggccaatatccccggcttcttagcggacagcgaaatccgaatcgatatcctc
aagcgacagcagatctgttgggctcagattgatatggaccagcaccctggcgttccttcc
gaagtggacaacttcaaggagctttgtccattggaatctgttcctcaaagcccaaccatg
aaaaacaaatcgcacacattcggctattacacgaccgtgtacaaagcggcgaacatgaag
accggtgtcttagtgtgtctcaggcgaattcacggctaccgcctactcaacacaaagtgc
atgatgttggtggaacaatggcgaaaactgtcgcatcccaatcttgtttccttacgccaa
gtgtttaccaccaagagttttggcgaccattcaatggtattcgtgtatgatctgtatccg
ggggctgagaccctgatggagaagcattttagtcatccagctcaaacgggaaacgcgttc
atggacccattcagtgggactgatgggaccgccagaccatattctcaacagaagaatcag
atgcttcgccaacaggccatgttgacaaataacgggctcttggctgagagtgtcatttgg
tcgtacgtgatccagttaacttcggcccttcggcacatccattccgcgggattggcctgc
cgtactttggacccgacaaagatcttgatcattaacaaatctcgactcctcttaaattgc
ggaggtatcttcgatgtcattacctttgacgcggctgctagcaatccaatgggtgccatg
gcccattaccaacaagaagatctcgtttcattgggcaaaatcgtcttagctctggcttgc
aactcctttctcgccattcaacgagagaaccttcaaacatcgatggaaattgttacctca
acttacagcacagacctcaggaacctcatcatgtatctgctaacaaacccgaaccgagtc
aaaagtgtgaacgacctcatgccgatgattggtgcccgattctacacgcatttggacgcg
gcatatgctcgatgtgacagcgttgaatcagagctatccaaagaggtcgaatcgtctcga
ctcttccgcttgtctacaaaaatttcaaccgtcgtggatcgtgctgagctcaatggtgac
tttggttgggcagaatatggcgatcggtacatgctgaagttgttccgggattacgtcttt
catcaagtcatggaggacaaccgcccctggttggatatggctcatgtgattacttgcctc
aataagttagacgctggctcatctgagcgggtgtgcctcatgtcaagggacgaacagaac
gtgcttgtcgtcagttatgccgagctgaaactgagtctggagcaatctttctcagagtgt
gtgcaagccagtcggatgcccccaaacccttcgggacattctggggccatgggttctcat
tactaa
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