Tigriopus californicus (tidepool copepod): 131890969
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Entry
131890969 CDS
T09700
Name
(RefSeq) protein nubbin-like
KO
K09364
POU domain transcription factor, class 2
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131890969
03021 Transcription machinery [BR:
tcf03021
]
131890969
Transcription factors [BR:
tcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
131890969
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
131890969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pou
Homeodomain
HTH_3
Motif
Other DBs
NCBI-GeneID:
131890969
NCBI-ProteinID:
XP_059096413
LinkDB
All DBs
Position
11:complement(6987070..6994239)
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AA seq
648 aa
AA seq
DB search
MTCSSSMAMPPNFHLQCTPLSSLTGANNVSEDMTRSNAESPSPNTFRAHQSKRNSSDGSS
SYEDCRSISSEGTQEDMVEENGSHQSRHHHHHHHPVHHNHRNHSHVHLSSRHLSSNMRHT
MDDGDDSGEEEEALNLAARSSPPSLEGSSSPGEFTKSQKGSPTSTALASIQSALAALQAG
QMSLNQLQALGAQNMLQNQIAAAVANQSSSLAFPFVVPSNLSPNGGSSIGNTEIQALQLA
LQQQQQNLQQQLQNFLFLQQQQMKAGISTSVSSQTVGSILHAQSQQVSQTTAQLRRLQRQ
QKEILNQRLQNNCQTSPALETPKAKDLLLQHKKAKLNHHNHPHHPHHHSSPVDGHHRNNN
SPNVSLALSSLTPVSMTMTPVSSMNNNPFLPSSDSPTSTRPLAVSTTIANGSTSPNLGNL
PSPPMTFGQRLDLPADENVDFEELEQFAKEFKQRRIKLGYTQGDVGLAMGKMYGNDFSQT
TISRFEALNLSFKNMCKLKPLLEKWLEDADAQINGTVPLSLTTTQPCSDLLGKRRKKRTS
IESNIRVALERAFLKNPKPTSEEIKLIGNTLSMEKEVVRVWFCNRRQKEKRINPASLSPT
GSDSPHYMASLSSLPTSLASPFHPSLANFVGAAAAAAAAGNLMRPQND
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgacgtgctcttcctccatggccatgccacccaatttccacctacaatgcactccacta
tcatctttaaccggtgctaataatgtctcggaagacatgactcgatccaatgccgaatca
ccctcaccaaacacattcagagcacatcaatctaaaaggaacagcagcgacgggagcagt
tcctatgaggattgccgaagcatcagcagtgaaggcacgcaggaggacatggtggaagaa
aatggaagccatcaaagccggcatcatcaccatcatcatcaccctgtacaccacaatcat
cgcaatcacagccatgtccacttatcctcgcgccatctctctagtaacatgaggcacacc
atggatgatggtgacgattccggagaggaggaagaagccctaaatctagcagcaaggtcg
tcgccacccagtttagaaggcagttcaagtccgggggagttcacaaagtctcaaaaggga
tcgcctacaagtacagccttggcgagcattcaatctgccttagcggctttgcaagctggt
caaatgtccctgaatcaacttcaggcattaggagcacaaaacatgcttcaaaaccaaatt
gcagctgccgtggccaatcaatccagctcgttggcctttccctttgtggtgccctccaat
ctaagccctaatggaggaagtagcattggcaatactgaaatccaagcccttcagctagcc
cttcaacaacaacaacagaatcttcaacagcaacttcaaaacttcttgttccttcaacag
caacagatgaaagccgggatttcgacgtccgtttcatcccaaaccgtcggaagcattctg
cacgcccaaagtcaacaggtatctcaaactacagctcagctccggcgacttcagcgacaa
caaaaagagatcctgaaccagagacttcagaacaattgccaaacatcgccagcactggag
actcctaaagcaaaggatttgctcttgcagcacaagaaggccaaattgaaccaccacaat
catcctcatcatcctcatcaccattcttcacctgttgacggacaccaccggaacaacaat
agccccaatgtttccctggccttatcttcattgaccccagtgtcaatgacgatgacgcct
gtgtcctcaatgaacaataacccttttctcccttcgtcggactcccctacttccacccga
ccactggctgtgtccacaaccatcgccaatggttccacttcaccgaatcttgggaacctt
ccctctcccccaatgacctttggccaacgattggatctaccagctgacgagaacgtggat
tttgaagagttggagcaattcgccaaagagttcaaacaaaggagaatcaaattaggttat
acccaaggtgatgtgggtctggcaatggggaaaatgtatggcaacgatttctcacaaaca
accatttcgcgattcgaagcgttgaatctttcgttcaaaaacatgtgtaagttaaagccg
ttgttggaaaaatggctggaagatgcggatgctcaaatcaatggaactgtgcccttgagc
ctgacaaccacccagccttgctctgatctgttgggcaaacgaagaaagaaacgcacctcc
atcgaaagcaacattagagtcgcgttggagagagcctttctcaagaatcccaaacccact
tccgaggagatcaaactcatcggcaacacgctctccatggagaaagaggtggttcgcgtc
tggttttgcaatcggcgtcaaaaggagaagcgcatcaacccggcttcgttatcacccaca
ggcagcgattcacctcactacatggcatctctctcatctttgcccaccagtttagcctct
ccgtttcacccttcattagccaactttgtgggtgcggcagctgccgctgccgctgctggc
aatctcatgcgacctcaaaacgattag
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