Tigriopus californicus (tidepool copepod): 131891722
Help
Entry
131891722 CDS
T09700
Name
(RefSeq) paired box protein Pax-5-like isoform X1
KO
K15608
paired box protein 2
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131891722
04131 Membrane trafficking [BR:
tcf04131
]
131891722
03036 Chromosome and associated proteins [BR:
tcf03036
]
131891722
Transcription factors [BR:
tcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
131891722
Membrane trafficking [BR:
tcf04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
131891722
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
131891722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAX
HTH_23
DUF6115
HTH_Tnp_IS1
Spt20_SEP
DUF3464
PAT1
DUF4175
Activator_LAG-3
DUF4820
VPS13_N
Motif
Other DBs
NCBI-GeneID:
131891722
NCBI-ProteinID:
XP_059097339
LinkDB
All DBs
Position
12:complement(7968832..7996891)
Genome browser
AA seq
521 aa
AA seq
DB search
MISMELPPPPVHNPPVSFADYVHQGQPMSSGSPIHYDGSPQYHNENYSDNCQDSKRKRHG
GVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRFYETGNF
KAGVIGGSKPKVATPHVVDAISKYKKDNPTMFAWEIRDRLLAEGVCSQDNVPSVSSINRI
VRNKAAERAKVNYNSSSTGNGPSGGVGTGSGGHNTPVSGSTVIGSGQQQQQQQQQQQQQQ
QQQQQQQQQQNALSSMVCPESILHRPSYSINGILGIPQPDANANNINKRKRDDEDENGLS
PEDTLKRQRLTSNYTTPNSSVSDLYHSMWNSPTPNPAGPQGKWPAVKEEPKGGNPGGGGM
SLPELLSAANNPGQQANNGSDSPNSYQYSSATPTGFAPAQGDEFTSPPPSSATTSSNDLI
YDSINMSQVQNYPPSLSSSLGSTLTPLTPIPVSEINKTMLSASSISVLGDHNSQFHTVSG
AGLSSVIPPSDYYNSASYSQYSAPPYGGYGYGPTSGSLLSK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgataagcatggagcttcccccgccccccgttcataacccgccagtgtcgtttgccgat
tatgtccaccaaggccaacccatgtcttcgggtagtcccattcactacgacggatctcca
cagtatcataacgaaaactactcggacaattgtcaggacagcaaacgaaaacgtcatgga
ggtgtgaaccagctcgggggagtgtttgtgaacggcagaccattgcctgatgtggtccga
caaaggatcgtggagctggctcataacggagtccgaccctgcgatatctcccgacaactc
cgagtctctcacggatgcgtctcgaaaatactatccagattttatgagactgggaacttt
aaagccggagtgattggcggcagtaaacccaaagtggccacgccccatgtggtggacgcc
atctccaaatacaagaaagacaatcccaccatgtttgcttgggagatccgggaccgcctc
ttagccgagggcgtgtgctctcaagacaacgtgcccagtgttagctccattaatagaatt
gttcggaataaagcggctgagagggccaaagtcaattataactcaagtagcactggcaat
ggaccttctggtggagttggcaccggttcgggaggtcacaacaccccggtgagtgggtca
acagtgattggatcaggacagcagcaacaacagcaacagcagcagcagcaacaacaacag
cagcaacaacaacaacagcaacagcaacaaaatgctctgtcttcaatggtgtgccccgag
tcgatcttgcatcgtccttcgtactcgattaatggaatcctaggcatccctcagcccgac
gccaatgccaataatatcaataagaggaagagagatgatgaagatgagaacggcctgagt
cccgaggacacgttgaagcgccagcgtctcacgtccaactacaccaccccgaattcatcc
gtctctgacctgtaccactctatgtggaatagtcccactcccaatcccgcgggtcctcag
ggcaagtggcccgctgtcaaagaggagcccaagggcggtaatcccgggggtgggggcatg
agcttgcccgagctcctgagtgcggccaataatcccggccaacaagccaataatggcagt
gacagtccaaactcgtatcagtactcatccgccacgcccaccggcttcgccccggctcaa
ggggacgagttcacctccccacccccttcaagtgcaaccacttcttccaatgacctcatc
tacgactcaatcaatatgagtcaagtgcaaaattacccgccaagtctttcctcttcactc
ggtagtacattaacccctctaactccaattccggtctctgagatcaacaagacaatgctc
tcagcctcatccatctcagttcttggagatcataattctcagtttcacacagtgagtgga
gcaggtttatcttccgtgatcccaccttccgattattataatagcgcatcgtattctcaa
tactctgctccgccctatggaggctacggctacggtccaacctcgggaagtctccttagc
aaataa
DBGET
integrated database retrieval system
