Tigriopus californicus (tidepool copepod): 131892221
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Entry
131892221 CDS
T09700
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent calcium channel subunit alpha-2/delta-3-like
KO
K04860
voltage-dependent calcium channel alpha-2/delta-3
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tcf04040
]
131892221
Ion channels [BR:
tcf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
131892221
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA_N
VGCC_alpha2
VWA_2
VWA
dCache_1
VWA_3
PDCD2_C
Motif
Other DBs
NCBI-GeneID:
131892221
NCBI-ProteinID:
XP_059097993
LinkDB
All DBs
Position
2:complement(13419625..13436588)
Genome browser
AA seq
1512 aa
AA seq
DB search
MGFQWLGSVWWRMLGVLLPYKMTPSNRTIKALFIVILCLSTCLGQVGQGAQRRKQKPRTR
IPAEDKIPNAQIENWALSFGSVLWETARAATRFDAIQKKFHSEGAKTVQVDGFAMVKEMS
MNVETMMQHKIDAIKRIMEYAENLALDHKYEKDLGTYLKKPPRMGGFHYFNAKKINVIDE
DDEDQIDDWDKYLSATDRLEDDDRFRVGYSRVMLEENKHFSGIPVNTNMSSVHVPTNVFD
GDPKVVNAIKWSRGLDRVFVDNYNRDPSLSWQYFGSSTGFMRQYPAMKWLTSDHDPDLYD
ARMRDWYIKSAASPKEIVILLDTSGSMTGLRREIAKHVVLNILDTLSEDDFVAIYKFSKY
PTPLVDCFTTLDGRAELVQATNENIREYQEAVDQVQTEEIANFTSALTVAFELLHEARLD
PDIGSNCNQAIMIVTDGVPYKYEEIFRLHNMPHKPVRMFTYLIGREISDLKAANHMACQN
RGYFAHVTTLAEVKEQVLKYVPVMARPMVMYREDHPIQWTGVYADVEDPKTSRWLWDLRE
RSRQKSRTANYRKIMKMQQESADPLAKMDVEEDTAAAREAFEKLTRLPYKQQMENFLSYG
RWDLTERDVERLKKDEEMKQRLIREITEAKTQKWTIPPKDLSMDMDESELRKNKFSGYRL
MTSVSIPVFDKKNHTNYTESVRVSDKKKVDVVKKVRIARLLGVSGTDVPIREIEKLTPPH
KLGVNGYSFAVNNNGYILYHPDLRPMVSRTERFQEILKPNYNSVDLAEVELVFDRLVDAQ
PRANDSELLALAFVGNRHYETKMRHDMVNQIKGQSFLTVKQHFDDMKRATVKTMDYFYHP
LVNTPFSLGIALPQDYGKFRVEGKIEVPLAKFNVSSLFEDTNWRVHPDWIYCQYNYAGDH
NREFISPEDTLKHFLIKMQEPNWSWGTPSVRPLPKCTNTEHFDPNCVKSHGIDKMDRNSH
VCERDLINSLVFDAVVTKDFEKQRSPHHGRGALSMRFDGYMNDMPAANNGSNETNEEIFT
TTTKPIVLVKEPEYYSPRRPNMRRNNFYPDYYPQDEQNETYKRVGIQLAFIATRSGLMRF
ADHSHLFVDPKEDDRNKETPTLIKEPHFSDINNKATEETWXKRAVDYHKVDPKAFVYSIP
FDVGEKRTKVTATHAIMVGRGSQKTPAAVAGMQIDYEIFRQMFFNETQKCVSGTRNCNKT
CASEDLECYVVDNNGFVIISEDPVDTGKFFGEVDGTILESLIQHNIYRPIRIYDYQAICL
EPEAEGGSASMLLTPFKLVAWLMNYMIGQVAWTIIRFEIHHMWNPDWTYAFPQGVGDEEF
PLEYGYNDATYYDPNSNYPYDNQNDPLMDEFSIKDGGPIPLLQMTYINKTTPKPCDKQVI
LYELNDEKLYKPNKTTGKPVPVKGKLSNCHESDCERPFSVQLIPHTNLVLIVADKLCPCF
STKISIEPTKVEYGPVNETAYCERLKYNIHRRKPTHCYNYHPEETEIKLCGKGHVHTLSW
VLATFAALLLLH
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgggattccagtggttggggagcgtctggtggaggatgttgggtgtccttctgccgtat
aagatgactccatcgaatcgcacaataaaagccttgtttatagttatcttgtgcttgagc
acatgtctgggtcaagtcggacaaggcgctcagagacggaaacaaaagcccagaacccgg
attccggcagaggataagatccccaatgctcaaattgaaaactgggctctgagctttggt
agcgttttgtgggaaacagctagagctgctactcgatttgatgccattcaaaagaaattc
catagcgaaggagccaaaactgttcaagttgatggtttcgcaatggtaaaggaaatgtct
atgaacgttgagaccatgatgcaacacaagattgatgctatcaagagaatcatggaatat
gccgaaaatttggccttggatcacaaatacgaaaaagacttaggcacttatctcaaaaag
cctcctcgaatgggcgggttccattactttaatgccaagaagatcaacgtgattgacgag
gacgacgaggatcaaattgatgattgggacaaatatctctccgctactgatcgacttgaa
gacgacgatcgcttcagagttggatattccagagtcatgctggaagagaataaacacttc
tctggcattcccgtcaataccaacatgagctctgtccatgttcctaccaatgtttttgat
ggagacccaaaagtggttaatgccatcaaatggtcaagaggcttggaccgagtatttgtg
gacaactataatcgggatccgtccttgtcttggcagtattttggtagttcaaccggtttc
atgcgtcaatatcctgctatgaaatggcttacttctgatcatgacccagatctctatgat
gcccgcatgcgggattggtacatcaaatccgccgcatcccccaaagagattgttatccta
ttggacacatctggatccatgactggtttgagaagagagatcgccaaacacgtggtttta
aacatcctggacactctttctgaagacgattttgtggccatttacaagttctccaagtac
ccaacgccattagtagactgcttcaccactctcgacggccgagcagaattggttcaagca
acgaatgaaaacatccgggaataccaagaggctgttgaccaggttcagactgaagagatt
gccaacttcacctcggccttgactgtggccttcgaattgttgcacgaggcccgtttggac
ccagacattgggtccaattgtaaccaagccataatgatcgttacagacggtgtgccttac
aaatatgaagagatcttccgcctacataacatgcctcataaaccggtcaggatgttcaca
tacctgattggtcgagagatttcagatttgaaggctgccaatcacatggcttgtcaaaac
agaggttattttgctcacgtgaccactctggccgaggtcaaggagcaagtgctcaaatat
gttccagttatggccagacccatggtcatgtacagagaggatcatcccattcagtggacg
ggggtttatgccgatgttgaggaccccaaaacgagcagatggctgtgggaccttcgagag
cgatccagacaaaagagtcgaacggccaattatcgcaagattatgaagatgcaacaagaa
tctgctgaccctctagccaaaatggacgtggaagaggacacggctgcagcgcgggaggca
tttgagaagctgactcggttgccttacaagcagcaaatggagaacttcttgagttatggt
cgatgggacttaacagaacgcgatgtagagcgattgaagaaggacgaagagatgaaacaa
cggcttattcgagagataactgaggccaagacccagaagtggaccattccacccaaggac
ctgtctatggatatggacgaatcggaattgcgcaagaacaaattcagtggctatcgactg
atgacttcagtcagcatcccagttttcgacaaaaaaaatcacacgaactacacagaaagt
gtccgggtgtctgacaagaagaaggttgacgttgtcaaaaaggttcgcattgcaaggctt
ttgggcgtttctggaactgatgttcccattcgagagatcgaaaaacttacccctcctcac
aagcttggtgtcaatggatactcttttgcagtcaacaataatgggtacatcttgtaccat
ccggacttaagacccatggtgtccagaacagaacggttccaagagattctcaagccaaat
tacaacagtgtggatttggctgaggttgagctcgtgtttgaccggttagtggatgcccaa
cctagggccaatgattccgagttattggcgttggcgtttgtcggtaatcgacattacgaa
actaagatgcggcacgacatggtcaaccaaatcaaaggccaaagtttcctaaccgtcaag
caacattttgacgacatgaaacgcgccacagtgaaaaccatggactatttctatcatcca
ttggtgaatactccattttcccttgggattgcgcttccacaagattacggaaagttccgc
gtggaaggcaagattgaggttcctctggccaaattcaatgtttcatcgctctttgaggac
acaaattggagagtccatccggattggatctactgccagtataattacgctggtgatcat
aatcgcgagtttatttctcctgaagatactctcaagcacttcttgatcaagatgcaagaa
cctaattggtcatggggcacaccaagcgttcgaccattgccaaaatgtaccaacacagag
cactttgatccgaattgtgtgaaatctcatggcatcgataagatggatagaaactcacat
gtttgtgagcgagacttgatcaattccctggttttcgacgcagtcgtgacaaaagatttt
gaaaaacaacgtagcccacatcatggacgtggagctttatcaatgagatttgatggttat
atgaacgatatgcccgctgccaacaacgggtcaaatgaaaccaatgaggagatatttact
acgacgactaaaccaattgtattggttaaagagcccgaatattatagccctaggagaccg
aatatgagaagaaataacttttatcctgattactatccacaggatgagcagaatgaaaca
tacaaacgagttggcattcagttggcattcattgcaacgagatccggattgatgaggttt
gcagatcactctcatctttttgtggatccaaaagaggatgaccgaaacaaagagacaccc
actctgatcaaggaaccgcacttttcggatatcaataacaaagccacggaggaaacctgg
taaaagcgagctgtagactatcacaaggtcgaccctaaagccttcgtctactcgattcca
tttgatgtgggagagaaaaggaccaaggtgacagccacacatgccattatggtgggtcga
ggcagtcaaaagaccccggcagctgtggctggaatgcaaatcgattatgagattttccga
caaatgttcttcaacgaaactcaaaaatgtgtctcaggaaccaggaattgcaataaaacg
tgcgcttccgaggatctggaatgctatgtggtggacaataacggctttgtcatcatctca
gaggatcccgtggatacgggcaagttctttggcgaggttgatggcaccattctcgagagt
ttgatccagcacaacatctatcggccaattcgaatctacgattatcaagcgatttgcttg
gaacccgaggcagagggtggcagtgccagcatgcttctcacccctttcaaattggttgct
tggttgatgaactacatgattggccaagtggcttggacgatcattcgctttgagattcat
cacatgtggaatccggattggacctacgcctttcctcaaggtgtgggtgacgaggagttt
cccctggagtacgggtacaatgacgccacatattacgatcctaactccaattacccctat
gacaaccaaaacgaccccttgatggacgagttttccatcaaggacggtggtccgattcct
ttgctgcagatgacttacatcaacaagaccacaccgaagccttgcgataagcaggtcatt
ctttatgaactaaatgacgagaaactctacaagcccaacaagactaccgggaagcccgtc
cccgtcaagggcaagctaagcaattgccacgagagcgattgtgaaagaccgttcagtgtt
cagctcattccccacacgaatttggtcctaattgtggcggataagctctgtccatgtttt
tcaacgaaaatttccattgaacctacgaaggttgagtacggtccggtgaatgagacagct
tattgtgagaggttgaagtacaacatccataggcgaaagcccacccattgttacaactat
catccagaagaaactgaaatcaaattgtgcggcaaagggcatgtccacactttgtcctgg
gttctggccaccttcgcagccttgttgttacttcattaa
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