Tigriopus californicus (tidepool copepod): 131892292
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Entry
131892292 CDS
T09700
Name
(RefSeq) ATP-dependent RNA helicase vasa-like
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcf03036
]
131892292
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131892292
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131892292
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-GeneID:
131892292
NCBI-ProteinID:
XP_059098082
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All DBs
Position
2:5330786..5334433
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AA seq
695 aa
AA seq
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MSDWEDESSAPVPIPVAPTPAPANGGGLQSFAPLETESGGSQPSATFTGRGRGFRGGARG
SQERSYGGSGRFPGGGAGDRGGGRRETSQDEATDADIWGQGGGMKSWSHGHDGAPRGRRE
GRGGGQRGGRGYGHENGGVSYGGGRGDDFRPRGRGGGFGGRDGFRGDFDHEGRGGGGYGD
RGPRRGGRGGGGRGGGGDFSRDGDRERDMPREKYEPEEETTDELLTHVIPSGIHFEKYDA
IDCKVSGENPPAAIESFAETGLRSILLDNIKKCGYKKPTPVQKHAIPIIREKRDLMACAQ
TGSGKTGAFLLPMLNRLLEEGVESHAGAESQTPEVVIMAPTRELALQIKDESRKFAMGTN
LKSVCIYGGTSVPQQLSILDRGCNILVATPGRLLQFVQMGKISFSALKFFVLDEADRMLD
MGFMPDVDSMVREPSMPTKEERQTLLFSATFPSEVQKIARDYLDNYLFLSVGIVGGACED
VRQSVFLVDQFDKRNKLFEILKDTDVQKSKTLIFVEKKKNADFLASFLCQSDFPTTSIHG
DRLQSERESALKDFRTSSKPVLVATAVAARGLDIRNVAHVVNYDLPKSIDEYVHRIGRTG
RMGNAGQATSFFDPKEDGDLAQDLEKVLMDAKQEVPLFLKEASSRTLNRGSGFNSGGFGG
RDIRQKRGGYSNNGRDKAPVSIEADAAGDEEESWD
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattgggaggacgaatccagtgcgccggtgcccattccggtcgcgcccactccc
gctccggccaacgggggtggactccagagctttgccccgcttgagaccgagtcaggtggc
tcccagcctagtgccacgttcacggggcggggacgcggattccggggtggagcgcgcgga
agtcaagagcgatcgtacggcgggtccggacgatttcccggaggtggggccggagacaga
ggcgggggccggagagaaacgagccaggatgaggctaccgatgcggatatttggggtcag
ggcggagggatgaagtcgtggtcgcatggtcatgatggtgccccgcgaggccgacgtgag
gggcggggagggggtcagcgagggggacgaggctatggccacgagaatggaggtgtgtcg
tatgggggaggacgaggtgacgactttcgaccgcgtggaaggggaggtggctttggggga
agggatggtttccgtggcgactttgatcatgagggtcgaggaggtggtggttatggtgat
cgcggtccgcggcgcggtggtcgtggcggcggaggcagaggcggtggcggtgacttcagt
cgggacggagaccgagagagggacatgccgcgtgaaaagtacgaacctgaggaagaaacc
accgacgagctactcacgcacgtcattccgtccgggattcattttgaaaagtatgacgcc
atcgattgcaaagtgagcggtgaaaacccgcccgcggccatcgaaagcttcgccgagacc
ggcctccggtccattcttttggacaacatcaagaaatgcggatacaagaagcccaccccc
gtccaaaagcacgccattcccatcatccgcgagaaacgcgatctcatggcttgtgcacaa
accggatcaggcaaaacgggtgccttcctcctgcccatgctgaaccggttactggaggag
ggtgtggaaagccatgctggggctgagagccaaacccctgaggtggtcatcatggcccca
acgcgtgagttggctcttcaaatcaaagacgagagccgcaagttcgccatgggcaccaat
ctcaagagcgtttgtatatacggaggcacatccgtacctcagcagttatccatcctcgac
cggggttgtaacattctggtggccaccccgggtcgtttgcttcaatttgtgcaaatgggc
aaaatctcgttcagtgcgctcaagtttttcgtcctagacgaagcggatcgcatgctggac
atgggattcatgccggacgtggactccatggttcgcgagccgtccatgcccaccaaagag
gagcgacagactttactgtttagtgccactttcccgagtgaagtgcagaagattgcccgt
gattacctcgataattatttgttcctgtccgtcggcattgtgggcggtgcttgtgaggac
gtgcgacaatccgttttcctggtggaccagtttgataagagaaacaaactcttcgagatt
cttaaagatacggatgttcaaaaaagcaagacgctaatctttgtggagaagaagaagaat
gccgatttcttggcctccttcttgtgtcaaagcgatttccctaccacctctattcatggg
gatcgactccaaagtgagcgcgaatcggccctcaaggatttcaggacaagttccaaaccc
gttttggtggccacagccgtcgctgcacgtggtctagatattcgcaacgtggctcatgtt
gtcaattatgaccttcccaaaagcattgacgaatacgtccatcgcatcggtcggacgggt
cgcatgggcaacgccggtcaagctacctccttcttcgaccccaaagaagatggtgacctg
gcacaagacttggaaaaggtcctgatggacgccaaacaagaggtgcccttattcctgaag
gaggcctcctcccgtacgctcaatcggggtagtggctttaacagtggcggattcgggggt
cgagacattcgtcaaaagcgtggaggctactccaataacggcagggacaaagcgcccgtg
tccattgaggccgacgcggcgggagatgaggaagaatcctgggattga
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