Tigriopus californicus (tidepool copepod): 131892617
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Entry
131892617 CDS
T09700
Name
(RefSeq) ATP-dependent helicase brm-like
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131892617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131892617
03036 Chromosome and associated proteins [BR:
tcf03036
]
131892617
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131892617
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
131892617
Chromatin remodeling factors
BAF complex
131892617
PBAF complex
131892617
GBAF(ncBAF) complex
131892617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ABC_tran
Helicase_C
Bromodomain
HSA
BRK
SnAC
AAA_21
ResIII
DEAD
AAA_14
AAA_22
ABC_tran_Xtn
AAA_29
HDA2-3
NACHT
AAA_16
RNA_helicase
AAA_24
RsgA_GTPase
MMR_HSR1
Bac_DnaA
AAA_15
AAA_23
DUF87
Motif
Other DBs
NCBI-GeneID:
131892617
NCBI-ProteinID:
XP_059098421
LinkDB
All DBs
Position
2:complement(4562622..4571692)
Genome browser
AA seq
2227 aa
AA seq
DB search
MSSSDVPLPNVPSAGLPMPPRGGPPGSGPHSPMPPPQSPSPSPGMRPSPSPSPMQGGGPP
NPYPPPPPGPPSDLQKLQNSINQMEERGMQNDPRYNQARQLHQNMMARQGPPGGPPGGPP
TSASPTVPPNMQVPASSAPRPAPAAGQTPGGPPTSTGGSNANVKPNRVTPVAKPAGIDPI
TLLQERENRLAARVAHRIDELSNLPVNMADDTRTKAEIELRALRLLNFQRQLRAEVVACT
RRDTTLETAINVKAYKRTKRQGLREARATEKLEKQQRLEAERRRRQKHQEYLNAVLNHGR
EMQNFHKTNITKIQKLNRAVLNWHANHEREQKKEQERIEKERLRRLMAEDEEGYRKLIDQ
KKDKRLAFLLSQTDEYINQLTDMVKQHKVEQVQKQKELKKKAKMENAAMLDESSQMSDVR
VHVKELSTGKILRGEEAPLASELESWLEKNPGYEEVPRDEDSDASDTEDTVDNPSSTEAI
LAKAKEEATKEDDGGDGQDYYSIAHTISEEITEQAAMLVGGKLKEYQVKGLEWMVSLYNN
CLNGILADEMGLGKTIQTIALITYLMEKKNNMGPYLIIVPLSTLSNWTLEFDKWAPACNV
VSYKGSPAARRSAQNQMRGSKFNVLVTTYEYVIKDKAVLSKIRWKYMIIDEGHRMKNHHC
KLTQILNTFYTSNNRILLTGTPLQNKLPELWALLNFLLPSIFKACNTFEQWFNAPFAITG
EKVELNEEETILIIRRLHKVLRPFLLRRLKKDVESQLPDKVEYIIKCEMSGLQRTLYNHM
QEKGVMKTDKIAKGKSGGAKALMNTIMQLRKLCNHPFMFQHIEESYAKHIGSPTDIVTGP
DVYRAAGKFELIDRVLPKMKATGHRILMFCQMTQCMTIIEDYFNYRGFKFLRLDGMTKSE
ERADMLKIFNDKNSDYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI
GQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGRFNNRSTGSERRELLQSILRA
DEEEEEENEVPDDEVINQMIARSEEEFEKFQQMDIDRRREEANQGSNRKDRLIQIKELPE
FLIQEDDEEEEEEEEEVVYGRGSRAKKDTNYSDQLSDKEWLKAIGAEDEDFDDDEDGGGG
PVGGPEDVESKRTGKRGKKKRRDEEEVEDEFGGPSRKKKKSSLKRLQKKMTTLMQIVIQY
KDKDERVLSEPFLKLPSKKELPDYYEVIKRPVDIAKIMNKINEAKYEDLEGLEKDFMLMC
SNTQKYNEDGSLIYEDSIVLQSVFTNARERLDEVVDSMDDKEELEGSGKTTPLPSAETSL
QGPPTTSGDLDESPASSKGSNSATKKRRKVTESVGIGRGKGGKKKSSKYVQSDDEDDDDM
DDDLQDDHPLHSAQLFSRGHICQLSRTLFQVRYTFHPGPIHRYHSVSKLEAIMPPKKGKK
GKKQDDEWPDDEQDKIIEEKMKNLLVGGGQEPDVSEDQVAASNLPSGPSGKASKGKKKKK
GFVMAMSDEDEARSGPDDQDEDANESQSKASKKDQKSKKANDESEDEEALQEDESKDRKK
AKGKNKKGRKMVKEEEEEDEKRDDVKDSPEEDEAGEDSHESDQEGSEEGKSKKSGTKKVV
LTHKEKKELKKKQKMEAEMARITKKGGEGHSELGDNFTVAQALKTGGALAQMETAVDIKI
DKFSIAAKGKDLFRDASLLIAQGRRYGLVGPNGHGKTTLLRHIGNRALQIPPNIDVLYCE
QEVMADERSALETVLSADVKRTELMKTCDDLEKQQEKGKDVTDQLTEVYDELRAIGADQA
EPKARRLLAGLGFTREMQDRPTNKFSGGWRMRVSLARALFIEPTLLMLDEPTNHLDLNAV
IWLDNYLQNWKKTLLIVSHDQSFLDNVCTDIIHLDQCKLWYYKGNYSMFKKMVVQKRREL
NKEYEKQERRIKELKASGSSKKKAEAKTKEVLTRKQEKNRTKLQKNDDDQGPTELLEKPR
EYTVKFRFPETSQLQPPILGLFNVSFKYPDQPYLFKNVDFGIDMESRVAIVGPNGVGKST
FLKLLMNDLTATQGEARQNLRLKIGRYDQHSGEHLTADESPTEYLMRLFNLPVEKARKQL
GSFGLQSHAHIIKMKDLSGGQKARVALAELTLSAPDVVILDEPTNNLDIESIDALAEAIT
EYEGGVIIVSHDERLIRDTGCQLWVIEEQTINEIEGGFDDYRKEVLEALGEEVSNPSLIA
NQAVLQS
NT seq
6684 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagttcggacgtgcctctgccaaatgtaccgtccgccggtctgcccatgccgccc
cggggtggtccacccggcagtggaccccattcgcccatgccacccccacaatcgccctca
ccttcgcccgggatgcgaccctcgccctcgccctcacccatgcaagggggtgggccaccc
aacccctaccctccgccaccgcctggcccgcccagcgatttgcagaaattgcagaactcc
atcaatcaaatggaagagcgtggcatgcaaaacgacccccgatacaaccaggcccgccag
ttgcaccaaaacatgatggcgcgccaaggtccgccgggtggtccccccgggggcccgccc
accagcgccagtcccactgttccacccaacatgcaagtaccggcttcgagcgcaccacgc
ccagcgccggctgccggtcaaacgcccgggggccctcccacttcgaccggcggatccaac
gcaaacgtcaagcccaatcgtgtcacacccgtcgccaaaccggcgggaatcgatcccatc
acattgttgcaagagcgggagaaccgattggccgcccgagtggctcatcgcatcgatgag
ttgtccaacctgcccgtcaacatggcggatgacacgcggaccaaagccgaaattgagttg
cgcgccttgcggctgctcaactttcagcgccagttgcgcgctgaggtggtggcttgcacg
cgtcgcgacaccaccttggagacggccatcaatgtcaaggcctacaagcgcaccaaacgg
cagggtttgcgcgaggcccgtgccaccgagaagctggagaagcagcaacgcctcgaggct
gagcgtcgtcgccgtcaaaagcatcaagagtatttgaatgccgtgctcaaccacgggcgc
gagatgcagaacttccacaagacgaacatcaccaagatccagaagctcaatcgcgccgtg
ctcaattggcacgccaaccacgagcgcgaacaaaagaaagagcaggagcggatcgagaag
gagcgcttgcggcgactcatggccgaggatgaggagggctaccggaagctcatcgaccag
aagaaggacaagcgtctggcgtttctgctctcgcagaccgacgagtacatcaatcaactc
acggacatggtcaagcaacacaaggtggaacaagtccagaagcagaaggagctcaagaag
aaagccaagatggagaatgcggccatgctagacgagagctcgcaaatgagcgacgtacgc
gtccacgtcaaggaattgagtacgggcaaaattctccgtggagaggaggcacctttggcg
tcggaactcgaatcttggttggaaaagaaccccggctacgaagaggtgccaagagacgag
gatagcgatgcctcggacaccgaggacaccgtcgacaatccctcctccaccgaagccatt
ctggccaaggccaaagaggaagccaccaaagaggacgatgggggcgacggtcaagactac
tactcgatcgctcacaccatttccgaggagatcaccgagcaagccgccatgttggtgggt
ggcaaacttaaagaatatcaggtcaagggtcttgaatggatggtgtccttgtacaataat
tgtctcaacggcatcttggccgacgagatgggcttgggcaagaccattcaaaccatcgct
ctcatcacatacctgatggagaagaagaacaacatgggcccgtacctcattatcgtgccc
ctatccacattgtctaactggacgctggagttcgacaaatgggcgccggcttgcaacgtg
gtcagctacaaaggcagtcccgctgcccgtaggtccgctcagaatcaaatgagaggatct
aaattcaacgttcttgtcaccacctacgaatacgtcatcaaggacaaggccgtcttatct
aaaatccgttggaagtacatgatcattgatgagggtcatcgcatgaagaaccaccactgc
aagctcacgcagatcttgaacacgttctacacgtccaacaatcgaatcctattaaccggc
accccacttcagaacaagctccccgagttgtgggccttgctgaatttcttgctcccatcc
atcttcaaggcgtgcaacacgttcgagcagtggttcaatgctcccttcgccatcaccggc
gagaaagtcgagctcaacgaagaggagaccatcttgatcattcgtcgcttgcacaaggtc
cttcggcctttcctcctacgacgcctcaagaaagacgtggaatcccaattgcccgacaaa
gtcgagtacatcatcaaatgcgagatgtctggccttcagcgaaccctttacaatcatatg
caagaaaagggcgtcatgaaaacggacaagatcgccaagggcaaatcgggcggcgccaag
gcccttatgaacacgatcatgcagttgagaaagctctgcaaccatcccttcatgttccaa
catattgaggaatcctatgccaagcacatcggttctcccacagacatcgtcacgggtcca
gatgtgtaccgagcggccgggaaattcgagctcatcgatcgggttctgcccaagatgaag
gctactggccatcgaatcctcatgttctgtcaaatgactcaatgcatgaccatcatcgag
gattacttcaattatcggggcttcaaattcctccgattggacggcatgaccaagagcgag
gaacgagctgacatgctgaagatcttcaatgacaaaaactcggattacttcatcttcctg
ctctccactcgagcgggaggtttgggattgaatctccaaaccgctgatacggtcatcata
ttcgattcggattggaatccccatcaggatctgcaagcccaagatcgagctcatcgaatt
gggcagaaaaacgaagtgcgggtccttcgactcatgaccgtgaattccgtcgaggaacgt
atcctggccgcagctcgatacaagctcaacatggacgaaaaggtcattcaggctggtcgg
ttcaacaatcggtccaccggttcagagcgacgcgagctgctccaatcgatcttgcgagcg
gatgaagaagaagaggaagaaaacgaggtgcccgacgatgaggtcatcaatcaaatgatt
gctcgcagtgaggaggagttcgagaagttccaacagatggatatcgatcggcgaagagaa
gaggccaaccaaggctccaaccgaaaagatcgcttgattcagataaaagaactccccgag
ttcctcattcaagaggatgatgaagaggaagaggaggaggaagaagaagtcgtgtacggt
cgtggaagtcgtgccaagaaagatactaattatagcgatcaattgtctgacaaggagtgg
ctgaaagccatcggggctgaagacgaggactttgacgatgacgaggatggtggaggtggc
cctgtgggcggtccggaggatgtagaatccaagcggacagggaagcgtggaaagaaaaag
cgtcgagacgaagaggaggtcgaggatgagttcggaggacccagtcgaaagaagaagaag
agctcgctcaagcggcttcagaagaagatgaccaccctcatgcagatcgtaatccagtac
aaggacaaagatgagcgagtgctgagtgagcccttcctgaagctgccttccaagaaggaa
cttccggattattacgaagtcatcaagcggcccgtggacattgccaagatcatgaacaag
atcaatgaggccaagtacgaagatctggaaggtctggagaaggacttcatgttgatgtgc
tcgaacactcagaagtacaacgaggacggatccctgatttacgaagattcgattgtcctc
caatccgtgttcactaatgctcgcgaacgtttggacgaggtcgtggatagcatggacgac
aaggaagagttggagggttcgggtaagactacgcctctacctagtgcggagacctctctg
caaggcccacccaccacctctggggatttagacgaaagccccgcctcaagcaaagggagt
aattcggccacgaagaagcgaaggaaagtcaccgaatccgttggaattggccgtggcaaa
ggcggcaagaagaaaagttccaagtacgtccaatccgacgacgaggatgatgatgacatg
gacgacgacctccaagatgatcatccactccatagtgctcagctgttttcacgtggacac
atttgtcaactttcaaggaccttattccaagttcgttacactttccatccggggccaatc
caccggtatcattctgtgagcaaacttgaagcgataatgccgcccaaaaaaggtaaaaag
ggcaaaaaacaagatgacgaatggccggacgatgagcaagacaagataatcgaggaaaag
atgaaaaatctcttggtgggtgggggccaagagccggatgtctccgaggatcaggttgcc
gcttccaacctcccctcagggccctcagggaaagcgagcaagggcaagaagaagaagaaa
ggttttgtcatggccatgagtgacgaggatgaagccagatccggccctgatgatcaagat
gaggacgcgaacgagagccaatccaaagcatccaagaaggaccaaaagagtaagaaggcg
aacgatgaatccgaggacgaggaagccttgcaagaggatgagtccaaggacaggaagaaa
gctaagggcaagaacaagaaaggacgaaaaatggtgaaggaagaagaagaagaagacgaa
aagcgggacgatgtcaaggattccccggaggaagacgaggcaggggaagattcgcacgaa
tctgatcaagaaggatcagaggagggaaagagcaagaaatcggggaccaagaaggtcgtg
ttgacgcacaaggagaagaaagagttgaagaagaagcaaaaaatggaagccgaaatggct
cggatcaccaaaaagggcggtgaaggtcattccgaattgggcgacaactttaccgtggct
caagctctcaagaccggcggagcactagcgcaaatggaaacggccgtggacatcaagatt
gataaatttagcattgccgccaagggcaaagacctcttccgagatgccagtctcctcatc
gctcaaggccgaaggtacggtttggtgggacctaatgggcatggcaagaccacgttgctc
cgacatatcggcaatcgagccctccagattccgcccaatattgacgtgctctactgcgag
caagaagtaatggcggatgagcgatccgccctggaaaccgttctttccgccgatgtgaag
cgcacggagttgatgaagacgtgcgacgacctcgagaagcaacaggaaaaaggcaaggac
gtgaccgatcagctcacagaggtctatgatgaactgcgggctatcggtgcggatcaagcc
gagcccaaggctcggagactcttggcgggtctggggttcacccgggagatgcaggatcgg
ccgacgaataagttctcgggcggttggcgtatgcgtgtgtccttagcacgagccttgttc
attgagcccacgttgttgatgcttgacgagcccaccaaccatttggacctgaatgccgtg
atctggttggataactacttgcagaactggaagaagaccttgctgatcgtgtcccacgac
cagtcatttttggataatgtgtgcaccgatatcattcacctggatcagtgtaaactatgg
tactacaagggaaactactccatgttcaagaagatggttgttcagaaacgccgagaattg
aacaaagagtacgagaagcaagagcgacgaatcaaggagctcaaagcctctggatcatcc
aagaagaaagccgaggccaaaaccaaggaggtgctcacaagaaagcaggagaagaatcgg
accaagctccagaagaatgacgacgaccaagggcccacggagctcttggagaagccccgc
gaatatacggtcaaatttaggttccccgagacatcccaactccagccacccatcctggga
ttgttcaacgtgagcttcaagtacccggatcaaccttatctattcaagaatgtagacttt
gggattgacatggaatccagggttgccatcgtagggccaaatggcgtgggcaaatccact
ttcctcaagctcctcatgaacgacttgacagccacgcaaggcgaagccagacaaaatcta
aggctcaaaattggccgatatgatcaacattccggagagcatttgaccgccgatgaatcg
cccacggaatatttgatgcgtttgttcaacttgccagtcgagaaagcccgtaagcaattg
ggatcctttggtcttcaatcccacgcccacattatcaagatgaaggatctctcaggtggt
caaaaagctcgcgtggctctggctgaactcactttgtcggccccggatgtggtcattttg
gacgagcccaccaacaacctggatattgagtccattgatgcactagccgaggccatcact
gaatacgaaggtggcgtgatcatcgtgtctcacgacgagcggttaatccgtgacacgggt
tgccaactttgggtgattgaggagcagaccatcaatgagattgaaggtggcttcgatgac
taccggaaagaggtcctggaggctctgggtgaggaggtcagcaatccctctttgattgcc
aatcaagctgtcctccaaagctga
DBGET
integrated database retrieval system
