Tigriopus californicus (tidepool copepod): 131892699
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Entry
131892699 CDS
T09700
Name
(RefSeq) very low-density lipoprotein receptor-like isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131892699
Membrane trafficking [BR:
tcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
131892699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
PLDc
Motif
Other DBs
NCBI-GeneID:
131892699
NCBI-ProteinID:
XP_059098507
LinkDB
All DBs
Position
2:complement(12709652..12739944)
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AA seq
1021 aa
AA seq
DB search
MNLSQVLALAILAATQISWSIGEEACSIYQFKCGNGKCIPSSWTCDGEDDCGDGTDEQAE
CRAYAKRIPKLKNVNCSESEFKCTSGKCVPKKWQCDGESDCDDASDESPDRCAARTCGPD
EWSCGTKGGRCIPLAWLCDEHNDCEDGSDEEVCNQTCTEEEFTCSNGKCIQKQWICDRED
DCGDGSDEKACPEHKCDQVNDFACGDGYCVTKKWRCDGDVDCPDASDEKGCQSKEKPNKT
NSTLDGSVTLIACATTEFQCLNKVYCIHHSWLCDGDPDCPDGSDEAVEQCGTKVQCRSDQ
FQCDNGECIPGHLQCSGVSECKDGSDEIKCRDPSLGCNSTVEYDCANDGTMCVPLSKLCD
GNNDCGAWQDEPKGECHVNECLVKNGGCDHKCVDLPIGHQCECKQGYVLVGDRSCQDVNE
CLTPGTCSQRCINRPGDFKCQCLKGYLRDPMDKTRCRAAEGHPSLLFAHKSDIRKISLDR
GGAMSSIVNETRSSCAVDYVFKTGMIFWSDVMTQKIYKAPIDEGSKQEVVIDHNIVTADG
LACDWVYSHLFWSDTGTNSIMMSDFGGKLLARVIKDDLEEPRSIAVYPEKGWLFWSDWGE
KPRIERSGMDGSHRSVIVSESVRWPNGITLDLVLERVYWIDAKLNLVGSADLDGAHSRVV
FYSPDQLKHPFSISLFEDWMYWTDWDKNAIFKANKFNGSDVMPVTAMNMKQIPMVVHVYH
PYRQPDTTNHCLPLNGRCSHICLPAPQLTKRSAKTTCFCPLGMKLGQDNLNCEVDPFYSE
PDHDSGMELFHVNAINHTQPQQSLEWNTTALESFFDDDESNNNNNNNNSNTSNSSSTLAT
SESPMVAPLWSSFFEETNYQFSNASVMLNNQNDEPDSSSFADRARTRDRLQSLSSSRSSV
AHPEGFMAGIAIGASAGVLVLIAIIGIALYRRCWYKSLQTINFDNPVYRKATITDEPMSN
LMSSRDTQSSLASSLLSTPSTCPTTRTFTSSTLAQEASEITEVEPLTSNSESKCSSSDSI
V
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgagccaagtgttggcactggccattttggctgccactcaaatatcatggagc
ataggcgaggaggcttgctccatttatcagtttaagtgcgggaacgggaaatgtattccg
tcgtcgtggacatgtgatggcgaggacgattgtggagatgggaccgacgagcaagccgaa
tgtcgagcctatgcaaagcggattccaaaacttaaaaacgtcaattgctccgaatcggag
ttcaaatgcacgtcaggaaaatgtgtgccaaaaaagtggcaatgcgatggtgaatcggat
tgtgacgacgccagcgacgaaagtccagacagatgtgccgctcgaacttgcggacccgac
gaatggagttgcggcacaaaaggcggaagatgtatccctctggcgtggctttgtgacgag
cataacgattgcgaagatggatcggacgaagaagtttgcaatcaaacttgcactgaggag
gagttcacatgctccaatggcaagtgtattcagaagcaatggatatgcgatcgagaggac
gattgtggtgatgggagtgacgagaaggcgtgtcctgagcacaaatgcgaccaggtcaat
gactttgcttgtggggatggttattgtgtgaccaaaaagtggcgttgtgatggggatgtt
gattgtccagacgcttcagacgaaaaaggttgccaatcgaaagagaagccaaataagacc
aattccaccctggatggtagtgtcacgctcatagcttgcgccaccacggagtttcagtgt
ctgaacaaggtctactgtatccatcattcttggttgtgtgacggagaccctgattgtccg
gatggatccgatgaagctgtggagcaatgcggaaccaaagtgcaatgtcgctcggatcag
tttcagtgtgacaacggcgaatgcatccccggacaccttcaatgctcgggagtcagcgag
tgcaaggacggttccgatgagatcaaatgccgcgatccttcgctaggatgcaactcgacg
gtggaatatgattgcgccaacgatggcacaatgtgtgttccattgagcaaattgtgtgac
gggaacaatgattgtggggcatggcaggacgaacccaaaggggagtgtcatgtcaacgaa
tgcctggtcaagaatggtgggtgtgaccacaaatgcgtagacttgcccattggtcaccag
tgtgaatgcaaacaaggctacgttctcgtcggggatcgaagttgtcaagatgtgaacgag
tgcctgacaccagggacatgttcgcagcgctgcatcaaccgccctggggacttcaaatgt
cagtgcctgaaaggctatctcagggaccccatggacaagactcgatgtagagcggccgaa
ggccacccttcattgctctttgctcacaagtcggatatccggaagatctcgttggaccgt
ggtggagccatgtccagcattgtgaatgagacccgttcctcttgtgcggtggattatgtg
ttcaagacgggcatgattttctggtcggatgtgatgacacaaaaaatctataaggcacca
attgacgaaggctccaagcaagaagtggtgattgatcacaacattgtgacggccgatggc
ttggcctgtgattgggtgtactcgcatctgttctggtcggacactggaaccaactccatc
atgatgtccgactttggtggcaagctcttggctcgagtgatcaaagacgatctcgaagag
cccagatcgattgccgtctatcccgagaaaggatggttattctggtcagattggggcgaa
aagcccaggatcgagcgatcaggcatggatggatcacatcggtctgtaattgtgtcagaa
agtgttcgatggcccaatggtatcactttggacttggtcctggagcgtgtctactggatt
gatgccaaactcaacttggtgggatccgccgatttggacggagcccattccagagtggtc
ttctattctcccgaccaattgaagcaccctttcagtatctcattgttcgaggattggatg
tattggacagattgggacaagaacgccattttcaaggccaacaaattcaatggaagtgac
gttatgcctgtcacggccatgaatatgaaacaaatcccaatggtggtccacgtgtaccat
ccctaccgccaacctgatacgacaaaccattgtcttccgctgaatggacgttgttcccac
atttgcctgccagctcctcaactcacgaaaagatctgccaaaaccacttgcttctgtcct
cttggcatgaaactgggacaagacaatcttaattgtgaagtcgaccctttttattcggag
ccagatcatgattcagggatggaattattccatgtgaatgccatcaatcacactcagcct
caacaaagcctggaatggaacaccacagctttggagagcttcttcgatgacgacgagagt
aacaacaacaacaacaacaacaacagcaacactagcaacagtagcagcaccctggcaacc
agcgagtccccaatggtggctccgctctggtcaagttttttcgaggaaaccaactaccag
tttagtaatgcctcggtcatgctcaataatcaaaatgacgaacccgattcatcttcattc
gcggaccgggctcgaacccgggatcgtctccaatccctatcctcctccagaagctcagtc
gctcatcccgagggcttcatggctggcatcgccattggagccagtgccggggtcttggta
ctcatagccattattggtatcgcattgtaccgcagatgttggtacaagtccttgcagacg
atcaactttgacaaccctgtgtatcgcaaggccacgatcacggatgagcccatgagcaac
ctcatgtcatcgcgagatactcagagctcgttagcgagctcacttttgtcgaccccgtcg
acttgtccaactacgagaactttcacgtccagcactttggctcaagaggcctcagagata
accgaagtggagcccctgacgtcgaattccgagagcaaatgttccagctcggacagtatc
gtctaa
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