Tigriopus californicus (tidepool copepod): 131892824
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Entry
131892824 CDS
T09700
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
131892824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tcf04121
]
131892824
Enzymes [BR:
tcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131892824
Ubiquitin system [BR:
tcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131892824
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
131892824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
zf-C3HC4_2
EIF3I
Beta-prop_DCAF4
Beta-prop_TEP1_C
zf-C3HC4
zf-RING_UBOX
Beta-prop_WDR19_1st
Beta-prop_EML
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
zf-C3HC4_3
zf-RING_2
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
RING_XB3-XBAT31
Beta-prop_DCAF12
zf-RING_5
Beta-prop_HPS5
zf-C3HC4_4
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_SPT8
zf-Nse
zf-RING_4
U-box
TRAF3_RING
WDR90_beta-prop_4th
Prok-RING_4
Sina_RING
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
131892824
NCBI-ProteinID:
XP_059098661
LinkDB
All DBs
Position
2:7509935..7512525
Genome browser
AA seq
633 aa
AA seq
DB search
MADDKPARGQKRRGREDASVAPNEAAASARKLLMSSGASPGNYLCPICFEVFKEAVVTKC
GHSFCQDCLIETLEHTSSKCPKCFQVINSATEVTPNFALNALAEQVLNWQKSGLATLLTT
AAQNRAANGAGSTPTTGSPSSSSLALLPVHGLPQCVDYLNHANLSGKDIEELQTWLGQQG
KAVAEREVTSKVILLKEFLELLKKEKHEALTKAQRDLDMVAQDLESTLAQAQSLGVDPQA
WTDSSIRRESPSSAQLLSMHQHYPNLVDCYFETRRCKSREPLADARRSTSPVGLDQFSTS
LSKFTKYSGIRVMANLNYTSDIYSNASIVSSIEFDKDAEFFAIAGVTKRIKVYDYNDVIR
DMVDIHYPRTEMVSHSKISCVSWNSFHKNQLLSSDYDGTVILWDARTTQKIKAYMEHEKR
CWSVDFNAVDTKLFASASDDARVKLWSTSVNHSIASLEAKANVCSVKFNPTSCFHLAFGS
ADHCVNYYDLRNLKSPLVIFHGHRKAVSYVRFLSANELLSASTDSQMKLWNVDSNNCIQS
YQGHINEKNFVGLTSNEDYFACGSENNSFFLFYKGLSKPLFSFKFDAARTLFGRNDQFVD
ESNEFVSALCWRNGSDNIIGANSQGCVKIFELN
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacaagccggctcgaggtcagaagcgacgaggccgggaagatgcctcggtg
gcgcccaacgaggctgcggcctcagcccgcaagcttttgatgagtagcggagccagtccg
ggcaattacctctgccccatttgcttcgaagtgttcaaagaggccgtggtgacgaaatgc
ggccacagcttctgccaggactgtctgatcgagaccctcgagcacacgtcgtcaaagtgt
cccaaatgctttcaagtcatcaattccgccacggaggtcacgcccaatttcgccttgaac
gccttggccgagcaggtgctcaattggcaaaagagcggcttggccaccttgctcaccacc
gccgcccagaaccgagcggccaatggagcgggatctacgcccaccaccggctcgccttcg
tcctcgtccttggccttgctgcccgtgcacgggctacctcaatgcgtggattacttgaac
cacgccaatttgtcgggcaaggacattgaggagctccagacgtggctgggtcaacaaggc
aaggccgtggctgagcgcgaggtcacgtccaaggtgatcctgctcaaagagtttctcgag
ttgttgaagaaagagaagcacgaagccctcaccaaagcccagcgagatttggacatggtg
gcccaagatttggagagcacgctagcccaagcccagtcgttgggcgtggatccccaggcg
tggacggactcctcgatccggcgtgaatcaccctcctcggctcaattgttgagcatgcac
cagcactatcccaacctcgtggattgttacttcgagacgcgtcgttgtaagtcccgtgaa
cccttggccgatgctcgccgctccacctcaccagtcggtttggaccagttctctacctcg
ttatccaagttcaccaagtactcggggattcgggtgatggccaacctgaattacacgagc
gatatatatagcaacgccagcatcgtgtcctccatcgagttcgacaaggacgctgaattc
tttgccattgcgggcgtgaccaagcgaatcaaggtgtacgactacaatgacgtcattcgc
gacatggtggacattcattacccgcggaccgagatggtcagccattccaagatcagttgc
gtctcttggaactcgttccacaagaaccagcttctgtcctcggactacgatgggaccgtg
attctttgggacgctcggactacccaaaaaatcaaggcctacatggaacacgagaaacgc
tgctggagtgtggacttcaacgccgtggacacgaaactgtttgcttcggcgtcggacgat
gctcgagtgaaactgtggtcaacctcggtgaaccattccattgccagcttagaggccaaa
gccaacgtgtgttcagtcaaattcaatcccaccagttgttttcacttggcctttggctcg
gccgatcactgtgtcaattactacgaccttcgaaacctcaaatctcctcttgtgatattt
catggccaccgcaaggccgtctcgtacgtccgattcttgagtgccaatgaacttctgagt
gcttctacggacagtcaaatgaaactgtggaatgtggactcgaacaactgcatccaatca
tatcaaggtcacatcaacgaaaagaactttgtcggcctcaccagtaacgaggattacttt
gcctgcggatcggagaacaactcgttcttcctcttctacaagggcctctcgaagcctctg
ttctcgttcaagtttgatgccgcccggactttattcggtcgaaacgaccaatttgtggac
gaatccaacgagtttgtctcggccttatgttggcgaaacggctcggacaacatcattggc
gccaatagtcaaggatgtgtgaagatttttgaactgaactga
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