Tigriopus californicus (tidepool copepod): 131892830
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Entry
131892830 CDS
T09700
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03020
RNA polymerase
tcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131892830
09124 Replication and repair
03420 Nucleotide excision repair
131892830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131892830
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131892830
Enzymes [BR:
tcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131892830
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131892830
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131892830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
YhiY
Motif
Other DBs
NCBI-GeneID:
131892830
NCBI-ProteinID:
XP_059098668
LinkDB
All DBs
Position
2:13134120..13141914
Genome browser
AA seq
1193 aa
AA seq
DB search
MYEQDEDYVHGGGAGGALGDEEEEDNEEIPNEIWQEACWIVISAYFEEKGLVRQQLDSFD
EFIQMNVQRIVEDSPPIDLQGEAQHAHGEIESPPRFVIKFEQIYLSKPTHWEKDGAPCPM
MPNEARLRNLVYSAPLYVDISKTIVKEGEDPVETQHPKTFIGKIPIMLRSTYCLLSGMTD
RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYRTEIRSCIEHS
SRPTSTMCVNMLARGGTNMRKSAIGQRIVGNLPYIKQEIPVMIVFRALGFVADRDILEHV
IYDFDDPELMEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEML
PHVGVSDFCETRKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLF
RTLMKEVRMYAQKFIDKGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHTARAGVSQ
VLNRLTYASTLSHLRRINSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL
MAYVSVGNTPSPILEFLEEWSMENLEEIAPSSITDATKIFVNGCWVGIHRDPEQLMSTLR
KLRRQMDIINAEVSMIRDIRDREIRIYTDAGRICRPLLIVEDGRLLMKKHHIEMLKEREF
NNYQWHDLVASGVVEYIDTMEEETTXGFGSPXXXXXXXXXXXXXXGSFYCQTWTHCEIHP
AMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVT
TRSMDYLRFSELPAGINSIVAIATYTGYNQEDSVILNSSAVDRGFFRSVFMRSYKDSELK
RGDQDECFEKPSRDTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIKIQENDDELE
GKTQRYSKRDASTFLRNSETGIVDQVMITLNQDANKFVKIRVRSPRIPQIGDKFASRHGQ
KGTCGIQYRQEDMIFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEVGDATP
FNDAVDVQKISKLLSEYNYQPRGNEVMYSGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS
RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHVCNL
CGMIAIANLRANTYECKGCKNKTQISQVKLPYAAKLLFQELMAMNIAPRMMTS
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaacaggacgaggattatgtgcacgggggcggtgcgggcggagctttgggcgac
gaggaagaggaggacaatgaggagatccccaatgagatctggcaagaggcttgttggatc
gtcatctcggcctatttcgaggaaaaaggcctggttcgtcagcaactggattcgttcgac
gagttcattcagatgaacgtgcagcggatcgttgaggactcaccgcccatcgatctccag
ggagaagctcaacacgcccacggagagattgaatccccgccccgattcgtcatcaagttc
gagcagatctatttgtccaaacccacccattgggaaaaggatggtgcgccctgccccatg
atgcccaatgaggctcgcttaaggaacttggtgtactcggccccgttgtatgtggacatt
agtaagaccattgtgaaggaaggcgaagatcccgtggagacccaacaccctaagacattc
atcggcaagatccccatcatgttgagatccacctactgcttactcagtggtatgacggat
cgtgatttgactgagctcaacgaatgtccgttggatccgggaggctactttatcatcaac
ggctcagaaaaggtattgatcgctcaagagaaaatggccaccaacacggtgtacgtgttc
tccatgaaggacgggaagtacgcctatcgaaccgagattcgatcctgcatcgagcactcc
tctcgtcccacctccaccatgtgcgtgaacatgttggctcgaggaggcacgaatatgcgc
aagagcgccatcggacaacgcatcgtgggcaaccttccgtacatcaagcaagagatcccg
gtcatgattgtcttccgagcattgggtttcgtggccgatcgagacatcctcgagcacgtc
atctacgattttgacgatcccgagctcatggagatggtcaaacccagtttggacgaggct
tttgtcatccaggagcagaacgtggcgctcaactttatcggaacccgcggagcccgaccg
ggtgtaaccaaagagaagcgtataaagtacgcccgggagatcttgcagaaagagatgttg
cctcatgtgggcgtgtccgatttctgtgagacgcgaaaggcctactttttaggctacatg
gtccatcgcctcctcctcgccgctttaggtcgccgagaactggacgatcgagatcattac
ggaaataagcggttagatcttgccggtccattattggccttcctgttccgaggcctgttt
cgaaccctcatgaaagaggtgcggatgtacgcccaaaagttcatcgacaaaggcaaagac
ttcaacctcgagctggccatcaagacccgaatcatttccgacggtctcaagtactcgttg
gccacgggaaattggggcgaccagaagaaggctcacacggctcgagcaggggtctctcag
gtgttgaatcgtctcacctacgcctccaccctatcccatttacgtcgcatcaactcgccc
attgggcgtgacggaaagctagccaagccccgccaactgcacaacaccctttggggcatg
atctgtcccgccgaaacgcccgagggcgcggctgtgggcctggtcaagaatctcgccctc
atggcctacgtctccgtgggaaacacgccctcgcccatcctcgagttcttggaggagtgg
agcatggagaatctagaggaaatcgcgccctcctccatcacggatgccaccaagatcttc
gtgaacggatgctgggtgggaattcatcgtgatcccgagcaactgatgtccacgcttcga
aagctccgccgacaaatggacatcatcaacgcggaagtgtccatgatccgagatatccgg
gatcgtgagattcggatctacacggatgccggccgaatttgtcggcctttactcattgtc
gaggacggtcgattgctcatgaagaagcatcacatcgagatgttgaaagagcgagagttt
aacaactaccaatggcacgatttggtcgcatccggagtggttgagtacatcgataccatg
gaggaagagaccacganaggcttcggtagtccgannnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnncgggtcgttctattgtcaaacttggacccattgtgaaatccatccg
gccatgattttgggcgtgtgcgcctccatcattcccttcccggatcacaaccaatcgccc
aggaacacctaccaatccgctatgggcaagcaagccatgggcgtgtacatcaccaacttc
cacgtgagaatggacacgctggcccacgtgttgtactacccacagaaacccttggtgacc
acgagaagtatggattatctgcggttcagtgaattgcccgctgggatcaactccattgtg
gccattgccacttacaccggatacaaccaggaggactccgtgatcttgaactcctcggct
gtggatcgaggcttcttccgatccgtgttcatgcgatcctataaggactcagagctgaag
cggggagatcaagatgaatgctttgagaagccatctcgagatacttgtcaaggcatgagg
aacgctatttatgacaagttggacgacgatgggatcatcgcaccgggtttgagagtctct
ggcgatgatgtggtgatcgggaagaccatcaagatccaggagaatgacgacgaattagag
ggaaagacccagcgatactcgaaacgggatgcttccacgttcttgaggaattccgagacc
ggaatcgtggaccaggttatgatcactttgaaccaggatgccaataaattcgtcaagatc
cgggtgcgatccccgagaatcccgcagattggcgacaagttcgcctcgcggcacggccaa
aaaggaacctgcggtattcagtaccgccaagaggacatgatcttcacctgcgagggcatc
acgccggatattatcatcaacccccacgccatcccatctcgtatgaccattgggcatttg
atcgaatgccttcagggcaaattgggctccaataagggtgaagtgggcgatgccacgccc
ttcaacgacgctgtggatgtgcagaagatctccaaacttctgagtgaatacaactaccaa
cctagaggcaacgaggtgatgtacagtggtcacactgggcggaagatcaacgcccaagtg
ttcctgggccccacctactatcaacgtttgaagcacatggtggacgacaagatccacagt
cgagcccgtggacccgtccagatcctcgtccgacaacccatggaaggtcgtgctcgagat
ggaggactccgtttcggagagatggagcgagattgtcaaatctcgcacggagcggcccaa
tttttgcgcgagcgtcttttcgaagtctcggatccgtatcgcgtgcacgtgtgtaacctc
tgtggcatgatcgccattgccaatctgagagccaatacctacgagtgcaaaggctgcaag
aacaagacccaaatctcgcaggtcaagctgccctatgcagccaaattgctcttccaagag
ctcatggccatgaatatcgcgcctcgcatgatgacgtcttga
DBGET
integrated database retrieval system
