KEGG   Tigriopus californicus (tidepool copepod): 131892970
Entry
131892970         CDS       T09700                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03030  DNA replication
tcf03410  Base excision repair
tcf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131892970
   03410 Base excision repair
    131892970
   03420 Nucleotide excision repair
    131892970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tcf03032]
    131892970
   03400 DNA repair and recombination proteins [BR:tcf03400]
    131892970
Enzymes [BR:tcf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     131892970
DNA replication proteins [BR:tcf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    131892970
DNA repair and recombination proteins [BR:tcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      131892970
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 zf-DPOE DNA_pol_B DNA_pol_B_exo2 RNase_H_2 Tom37
Other DBs
NCBI-GeneID: 131892970
NCBI-ProteinID: XP_059098833
LinkDB
Position
2:12282701..12293795
AA seq 2292 aa
MVWSNKGRFGSGTGPAPSGGPGSEESQTDLRLRESRANEAIDAKYGFDRVLTCREDVGYL
LNMHSSEILDEDKRLIAAVDYYFIQEDGARFKVTLPFQPYLYIRIKQACMQETQAYLSKK
YGGGLITAMEIVHKEDLDLPNHLVGLKQTYLKLTFLTTADLTRVRKDLLTAVRKNKERLK
ASTAYTELLAEAMTHPDESSHSSSHASIRSNPLENILDIREHDLPLHVRVSIDRSIFVGS
WYQVKCKGLNEEPEIIKREDLIERPDCIVLAFDIETTKLPLKFPDPSLDQIMMISYMIDG
QGYLITNREIISKDVDDFEYTPKPEFEGHFIVYNEANELELLQKFFDHILDVKPHIFVTY
NGDFFDWPFIEARAAIHGMDMAQEIGFAKNREGVYCSRPASHMDAYCWVKRDSYLPVGSQ
NLKAAAKAKLRYDPVELDPEDMCRMATEEPQDLSNYSVSDAVATYYLYMKYVHPFCYALC
TIIPMEPDEVLRKGSGTLCESLLCVQAFHANIIFPNKHETVLNKMTEDGHVMDSETYVGG
HVEAIESGVFRADIPCRFRMVPEAFQKLHDDVDRCMRRAIEVEEGIPMAEVLNFDQVCDD
IREKLADLRDTPARLENPIIYHLDVGAMYPNIILTNRLQPSAMVDETDCAACDFNKPNAT
CQRRMPWMWRGEIMPASRSEYHRIQQQLETEKFPPFYPGGQNRAFHELTKEERATYEKKR
LSEYCRKAYKKAHATKMEERYTTICQKENSFYVDTVRSFRDRRYTYKGLCKVAKKEVSEA
ASSGDAAWLKSAKNKEVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGAGI
IKCARELVEQVGRPLELDTDGIWCVLPASFPENYVVKTKNVKKPKVTISYPGAVLNIMVQ
DNFTNEQYHELVDPENLVYEQKKENSIFFEVDGPYLSMILPASKEEGKKLKKRYAVFNFD
GSLAELKGFEVKRRGELQIIKIFQSTVFEAFLKGDSLESCYEAVAKVADYWLDVLYSKGA
NMPDSELFELISENKSMSKTLAEYEGQKSTSISTAKRLAEFLGDQMVKDAGLSCRFIISK
KPEGAPVTERAIPLAIFESEPSVRRHYLRKWLKDNTMTDFDIRKVLDWGYYVERLGGTIQ
KIITIPAALQGIPNPVPRIAHPDWLHKKIMEKDDVLKQRKISEMFTVQAKKAPVLSEDQD
MFEETPQESSEDIEDVGRKPLGLKNVAVNSKRKRDDVAGPTKENWTKSWKEVLGDPPPRS
KVREWIEFQKKKWAHQALQKAQAQKKRSKGQEDFGCGIGGRGVIRTGNHSTLGGFLRKAQ
RTLLDTPWQVIQIVETVQPGLFKVWALVGSDLHMIKLVVPRVFYVNQRNPKEAGDTGGLW
RKVQKTLPRAHPVMNLYEYRVPEDIYRQHASDLVTDLSTPDIEGIYETQVPLDFRALVDL
GCLCMVDKAKAKDLKVGETDTFDLSWLQFKSLGHYPYLADDSFRKVYFYQHKVNAKSIFG
LFFPMSQKASVFVLDTVRSNQMPNLVTLYNNERAQLVKSNAVEKDLLPESDFAFEVRVET
DIRQVFRQIQKLLTAFKDEKRGPTVVMVQSLFNFQNLTTSMPVLSDFPMVPIHVSDSDKL
YSVLDWQRVGARQMIRHFLKSETYLQATIEQCRYFHVPVGNLPKDTTAFGADLFYARHLR
KQNFVLWCSPTNLPDLGGKEADDSRLLTEAEDASLSVVVNNPGSYRTVCVEIELDALAVN
TLLQAHHVNDIEGTAGSVAFDTMPQASLEEMLGGQVSTLASYDETALVSAAFRVLRAMVN
AWLREVSQFRNIFADYQIIHFYRWLRSPNALLYDPALRKTLLNLMKKLFMQLISEFKRLG
AEIVHADFNRIIICTKKRSLEDALAYVEYVTNTIHNKELFHSIDMRFSQAWDYLLWCDPA
NYGGIKSKPPSSLKPSEISGTPVKKKPPTGDESDEEDGKSEEGTEFSENDEDSSDEPEIE
MNWNMATYLPEEGACQNNFNTVIAGYITANYQYLLEAADKIAPGSTPVRRRRNSQFSQST
PGKTRKSNGEALSVEEYAKDLINGELTQRLFSVTQKIHKKLPPHVGDDEESVFPQLPGSH
LKLRSPALEFVKALYKVLSLDTCIRDEVHRLRKNLLRLIGVGEFSDEADWQDPCISFILP
EVICKHCNHCRDIDLCKDPHQGEIRGVPAWLCASANCQTAYETSEIESQLLDAVERKTMG
FILQDLQCTKCKGIKDRNMPRYCKCAGIFKTVQSFKDLEQLLRTFLGISRHYQMPLLQEV
VEFKMTMNKMTM
NT seq 6879 nt   +upstreamnt  +downstreamnt
atggtgtggtcgaataaagggcgttttgggagcgggacgggcccggcccccagcggtggg
ccgggcagtgaggaatcgcagacggatttgcggttgcgcgaatcccgcgctaatgaggcg
attgacgcgaaatacggcttcgatcgggttttaacttgtcgtgaagatgtgggttacttg
ctgaatatgcattcgagcgaaatcctggatgaagacaagcgattgattgcggccgtggat
tactacttcattcaagaggatggcgccagattcaaagtcactttaccctttcaaccctat
ctgtatattcgcatcaaacaggcctgcatgcaagaaacccaggcctaccttagtaagaaa
tacggcggcgggttgatcaccgccatggagatcgttcacaaagaggacctcgacctgccc
aaccatttggtgggcctcaaacaaacctacctcaagctgacctttctcacgaccgcggac
ttgacccgcgtccgaaaagatctgctgacggcggtgcggaagaacaaagagcggcttaag
gcctctacggcctacacggagcttttggccgaggccatgacccatccggatgagtcctcc
cattcctcatcccacgctagtatccgctccaatccattggagaacatcctggatatccgg
gaacacgacctgccccttcatgtccgagtgtccatcgaccggtccatcttcgtggggtcc
tggtatcaggtcaagtgcaagggactgaacgaggagcccgagatcatcaaacgcgaggat
ctcatcgaacgccctgactgtatagtgcttgcatttgatattgaaaccaccaagctcccg
cttaaattccccgatccaagtctggaccagatcatgatgatctcgtacatgatcgatggc
cagggatatctcatcaccaatcgggagatcatctccaaggacgtggacgactttgagtac
acgcccaaaccggagttcgagggtcacttcattgtctacaacgaggctaacgaactggag
ctgctccagaagttcttcgaccatatcctggacgtcaagccgcacatctttgtcacctac
aacggcgacttcttcgactggccgttcatcgaggctcgagccgccattcacggtatggac
atggcccaagagatcggattcgccaagaatcgcgagggcgtgtattgcagtcgccctgcc
agtcacatggacgcctattgttgggtcaagcgggattcttacttgcctgtgggatcccag
aacctgaaagcggcggccaaagcgaaattgaggtatgatccggtggaattagacccggaa
gacatgtgtcgcatggccacggaagagccgcaggacctgtccaactactccgtgtccgac
gccgtggccacgtattacctctatatgaagtacgtccatcctttctgctacgctttgtgc
acgatcattcccatggaaccggatgaggtgctccgaaaaggttcgggcacgctctgcgag
tcgcttctatgcgttcaagccttccacgccaacatcatcttccccaacaaacacgagact
gtactgaacaaaatgaccgaggacggccacgtgatggactcggagacctacgtgggcgga
cacgtggaggccattgagtcgggcgtgttcagggcggacatcccttgtcgcttccggatg
gttccggaggccttccagaagctccatgacgacgtcgatcgatgcatgagacgagccatt
gaagtcgaggagggcattcccatggctgaggtgctcaatttcgaccaagtctgcgatgat
atcagagagaagctcgcggatctccgagacacacccgcgaggctggaaaatcccattatt
tatcatttggacgtaggggccatgtacccgaatatcatattaaccaatcgacttcaacct
tctgccatggttgatgagacggactgtgcggcttgcgatttcaacaagcccaatgcgacg
tgccaaaggcgaatgccgtggatgtggcgaggcgagatcatgccggcctccagatccgag
tatcaccgcattcaacaacaattggagacggagaaattccctccgttctaccctggcggg
caaaaccgcgcttttcatgagctcaccaaagaggagcgagccacgtacgagaagaagcgc
ttgagcgagtattgccggaaagcctataagaaggcccacgccacgaagatggaggagcgc
tacactacgatctgtcagaaggagaacagtttctatgtggacacggtccgctctttccga
gaccggcgatacacttacaaaggtctttgtaaagtggcgaagaaggaagtgtctgaagcg
gcctcctccggcgatgcggcgtggctcaaatcggccaagaacaaagaggtcctgtacgac
tcgttgcaattggctcacaagtgtattctgaactcgttctacggctacgtcatgcggaaa
ggagcgcgatggtattccatggagatggccgggatcgtgtgctacacgggagccgggatc
atcaaatgtgcccgagaattggtggagcaagtgggtagacctctggaattggacacggat
ggcatctggtgcgtcttacccgcctccttccccgagaactacgtggtcaaaaccaagaat
gtcaagaaacccaaggtgacgatatcctatccgggagcagttttgaacatcatggtccaa
gataacttcaccaatgaacaatatcacgagttggtggatccggaaaatctcgtctacgag
cagaagaaggagaactccatcttctttgaagtggacggaccgtacttgtccatgatcttg
cccgcctccaaagaagagggcaagaagctcaagaaacgttatgccgtgttcaactttgac
ggctctttggccgagttgaaaggtttcgaagtgaaacgacgaggtgaattgcagatcatc
aagatctttcaatccacggttttcgaggcgttcctcaagggcgattctcttgagtcttgc
tacgaggctgtagccaaagtggccgattattggctggacgttctgtactcgaaaggtgcc
aacatgccggattccgagctcttcgagctgatctcggagaacaagtccatgtcgaaaacc
ctggccgagtacgagggacaaaagtccacttccattagcacggccaaacgtctggcagag
ttcttgggcgatcaaatggtcaaggatgcgggtctgagttgcagatttatcatttccaaa
aagcctgaaggcgctcccgtcaccgagagagccattccattggccatttttgagtctgag
ccgagtgtgcggcgccattatttgcgaaaatggctcaaagacaacacgatgaccgacttt
gacatccggaaagtgctggattggggatattacgtggaacgtttgggtgggaccatccaa
aagatcatcaccattcccgcggccttgcaaggcattccgaaccctgtgcccaggatcgct
catccggattggctccacaagaagatcatggagaaggatgacgtgctgaagcaaaggaaa
atcagtgaaatgttcactgttcaagccaaaaaggctcctgttctctccgaggatcaagat
atgttcgaagagacgccccaagagtcgtcagaagacattgaggacgtcggacgaaaaccc
ttgggtttgaaaaatgtggctgtgaactcgaaacgaaagcgcgatgacgtcgctggacca
accaaagagaactggaccaaaagctggaaggaggtcttgggcgaccctccaccaagatcg
aaagtgagagagtggatcgagttccaaaagaagaaatgggcccatcaagccctccagaag
gctcaggcccagaagaagcgatccaaaggccaagaggacttcgggtgtggaattggcgga
aggggcgtgattcgtaccggaaaccactccactttgggtggtttcctccgcaaagcccaa
aggaccctgctggatactccatggcaggtgatccaaattgtggaaactgtccaacccggc
ctattcaaagtgtgggctttggtgggctctgatctgcacatgatcaagcttgtcgttcct
cgagtgttctatgtgaaccaaaggaaccccaaagaggccggtgacaccggaggcctgtgg
cgaaaggtgcagaaaaccttgcccagggcccacccggtcatgaatttgtacgagtacaga
gtacccgaggacatttatcgacaacatgccagtgacttggtcacggatttgtcgaccccg
gacattgaggggatctatgaaacccaggtgcctttagactttagggctctggtggacctt
ggctgcctttgtatggtggacaaggccaaggccaaagacctcaaggtgggtgaaaccgat
accttcgacttgagttggcttcagttcaagagcctcggacactatccctacttggcggat
gattcattccgaaaggtgtacttctaccagcacaaggtcaacgctaaatccattttcgga
ctgttctttcccatgagccagaaggctagtgtgttcgtcttggacacggttcggagcaat
caaatgcccaatttagtcacattgtacaacaacgaacgagcccaattggtcaagagcaat
gctgtggagaaagatctcctccccgaaagtgattttgcttttgaggttcgagtcgaaacg
gacattcggcaagtgttccgacagatccagaagctgctcacggcttttaaagacgaaaaa
cgtggtcccaccgtggtcatggtccaatcgctcttcaacttccaaaacttaactacatcc
atgccagttttgtcggatttccccatggttcccatacatgtctcagatagcgacaagctt
tacagtgtcttggattggcagcgagtcggtgctcgtcagatgatccggcactttctcaag
tccgagacctacttgcaagccaccatagagcaatgtcggtatttccacgtgcccgtgggt
aacctgcccaaggacaccacggcttttggggcggatcttttctatgcacggcatttgcgc
aagcaaaacttcgtactatggtgctcacccacgaatctccccgatcttggtgggaaagaa
gcggatgatagccgacttctcaccgaagctgaagatgcctctttgtccgtggttgtgaac
aaccctggctcatatcgcacggtttgtgtcgagattgaattggatgccttggctgtgaac
accctactacaagctcatcatgtcaatgacattgaaggcacggctgggagtgtggccttc
gatacaatgccccaagcaagtttggaggagatgttgggtggtcaagtctcaacgttggca
tcctatgatgaaacggccttggtctctgcggccttccgagtcttgagagccatggtgaat
gcttggttaagagaggtgtcgcagtttcgcaacatctttgccgattaccaaatcattcat
ttctaccgatggctccgatctcccaatgccctgttgtacgatcctgccctgagaaagacg
ttattgaacttgatgaagaagttgttcatgcaattgatctccgaattcaaacgccttggg
gcggagattgtgcatgcagacttcaatcgaatcatcatttgcaccaaaaaacgctctttg
gaggacgccctcgcctacgtggaatatgtcaccaacaccattcataacaaagagctcttt
cactccatcgacatgcgattcagtcaagcttgggactatttgctctggtgcgatccggcc
aactacggtgggatcaagtccaagccgcccagttcgttgaagccctccgaaatctccggc
actccagtcaagaaaaaaccacccacaggtgacgagtccgatgaggaagacggcaaatcc
gaggaagggaccgaattcagtgaaaacgacgaggacagctcggatgagcccgaaattgaa
atgaactggaacatggccacatatctgcccgaggaaggcgcttgtcagaacaacttcaac
accgtcattgcaggatacattacggccaattatcagtatttactcgaggcggccgacaaa
atcgcgccgggatccacgcccgtgcgacgacgaaggaactctcaattcagccaatccacg
cctgggaagactaggaaatcgaatggtgaagccttatcagtcgaggagtatgccaaggat
ctgatcaacggagaactcacccaaagactgttcagcgtcacccaaaagatccacaagaaa
cttcccccgcacgttggagatgacgaagagagcgttttcccgcaattacccggatcccat
ctaaagctgagaagtccggcattggaatttgtcaaagcgttgtacaaggtcctgagtttg
gacacgtgtattcgtgatgaagtacatcgtctacgaaagaatctcttgcgattgattggc
gtaggggaatttagtgacgaagcggattggcaggatccgtgtatctccttcattttacca
gaggtcatttgcaagcattgtaatcattgccgcgacattgatttgtgcaaagatccgcat
caaggagagataagaggcgtgcccgcttggttgtgtgctagtgccaattgtcaaaccgcc
tacgagacctctgagatcgaatcccagcttttggacgcggtcgagcggaagaccatgggc
ttcattctacaggatcttcaatgcaccaagtgcaagggaatcaaggaccggaacatgcct
cgatattgcaaatgtgcaggaatcttcaagacggtccaatcgttcaaggacttggaacag
ttgttgaggaccttcttgggaatttctcgacattatcaaatgcctttacttcaggaagtg
gtcgagtttaaaatgacgatgaataagatgaccatgtaa

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