KEGG   Tigriopus californicus (tidepool copepod): 131893190
Entry
131893190         CDS       T09700                                 
Name
(RefSeq) collagen alpha-1(I) chain-like
  KO
K19719  collagen type II alpha
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf04512  ECM-receptor interaction
tcf04518  Integrin signaling
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    131893190
   04518 Integrin signaling
    131893190
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:tcf00536]
    131893190
Glycosaminoglycan binding proteins [BR:tcf00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   131893190
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 131893190
NCBI-ProteinID: XP_059099147
LinkDB
Position
1:13566126..13574095
AA seq 1536 aa
MTRKKHPGQIQGITNRKIRMRMMLTMKNWKLSTLTGLAIVATVLLAFSPLVEAKPEAQPL
PNPDAQPDPRPKAQDPNGEYNYEDYGEYGNFEGDYYEQYGEQSGQVPPNNEYDTDVVGVN
PCAGVQCLAVNCPVETYTPFGECCPVCPQGFSEPQETVQPSYPSETEEQEYGQPESETPT
EVDANSAPGPRGGPGRQGESGRPGEVGLPGVPGYPGVPGMPGPPGPQPNLEPFISQLQQS
AGGEKGPSPDPFSYMQAQVGPVGPRGSTGMQGPPGPQGFQGPQGESGDPGPSGPPGALGP
RGLSGLPGKDGESGQDGEPGTQGPTGPPGKRGLPGMPGLPGPKGHRGFPGLDGAKGSIGS
IGEKGESGGPGAMGPPGPMGPAGPRGERGREGSSGPPGLRGIDGMTGPPGEPGSIGKPGP
PGFPGIPGSKGDMGATGPKGSPGLQGPRGDSGIPGRPGEPGKMGPPGKDGFNGEKGSLGS
PGAPGPQGFPGPRGSPGLNGSPGPLGPKGTAGQPGRDGPKGESGMKGELGQMGPRGLPGP
TGSAGRRGRRGIRGPAGPPGPLGEPGPPGGRGMPGADGPAGPKGQSGDRGVPGSAGPKGK
HGDTGRPGAPGLQGLRGAPGRIGPRGQPGKIGPRGEPGADGKTGEVGPQGLQGLPGPMGP
PGDKGLIGPPGQDGNPGTPGNPGPRGDPGTDGLTGPQGPPGPTGPSGERGTPGPPGPRGF
QGMPGATGKDGRNGKDGEAGLPGRAGLPGEQGKQGSRGFPGERGAIGGPGAPGERGEPGG
PGLDGPPGDIGPKGNPGHKGPPGLVGLPGQRGMPGPAGSKGSSGVQGPVGPGGPRGKQGE
RGLQGVTGLVGPPGEPGAQGDPGSPGPVGETGATGMIGERGSPGPQGMQGFPGPPGIPGM
PGVKGGRGLPGAKGDQGNPGSVGGPGAPGPSGLTGLPGSKGARGEPGPRGESGMMGPPGR
PGLAGRNGEPGRQGQIGMPGIAGIKGSSGSRGSPGRTGPSGPPGMPGAEGPKGGVGSDGP
PGPYGNPGPAGPPGDRGSPGLPGPTGPVGGMGPRGTQGERGESGPPGKEGEQGPTGLPGP
HGPPGVRGERGEQGQTGKPGAPGLGGRPGDKGPPGSAGSMGPPGGPGLPGPPGKTGNSGP
PGERGDRGDSGPPGIVGPPGMIGKSGPPGLQGPPGEDGKHGMKGSKGHSGLIGLQGLPGP
TGPPGDKGPPGNNGTPGTPGEPGPRGPPGMDGISGPPGLQGPPGPRGMSGDEGKRGPPGE
RGDTGPPGPPGQSTGYDAAALAALMSQGNTKGPDPLASDQPLGISPKDLNNEQQKQLVIQ
AYHKLKESFAEFAKPEGNQESPAKTCRELKVAHPNKNSGEYWVDPNGGDPKDAILVYCDM
EKRATCLQPKPIVTEETTVETSEKEVWFSDIPSGFNLNYKADSNQITFLQMLSTKASQNI
TYHCSNSVAFYHAKRDHYRKAVTLMSWNDLEIRPRGKFRYTVPVDECQHENVDWAQTIIS
MKDTKPARLPILDVGIRDIGNLRQKFKIEVGQACFE
NT seq 4611 nt   +upstreamnt  +downstreamnt
atgaccagaaaaaagcacccaggtcagatccaaggtatcaccaaccgcaaaataaggatg
aggatgatgttaacaatgaagaactggaagctatccacgctaacaggcctggccatcgtg
gccacggtcctcttagcattcagtcccttagtagaggcaaaacctgaggcccagccattg
ccaaacccggacgcccaaccagatccaaggcccaaggcacaagatccaaacggagaatac
aactacgaagactatggcgaatacggaaacttcgagggagactattatgaacaatatgga
gagcaatcaggccaagttccaccaaacaatgaatatgacactgacgtggttggagttaac
ccctgtgctggggttcaatgtttggctgtaaattgcccagtggagacctatacccctttc
ggagagtgttgccctgtttgtccccaagggttctcagaaccccaagaaactgtccaacct
tcctacccatcagaaactgaagaacaagaatatggacaaccagagagcgaaacaccaaca
gaggttgatgcaaacagcgcccctgggcctcgcggaggtcctggtcggcagggagagagt
ggaagaccgggtgaagtcggccttccaggagtcccgggttaccctggtgtgccaggtatg
ccaggaccaccagggccacaaccaaacctagaacccttcattagccaattgcaacaatct
gctggaggcgaaaagggtccttcaccagatccattttcatacatgcaagcccaagtggga
cctgttgggccacgagggtctacaggcatgcaaggaccaccagggccacaagggtttcaa
ggaccccaaggagagagtggtgatccgggaccatctggaccacctggtgctctaggacca
agaggattgtcaggacttcctggcaaagatggtgaaagtggacaagatggggagcctgga
actcaaggacctacggggcctccaggaaaacgaggtttacctggaatgcctggccttcca
ggtccgaaaggtcatcgaggcttcccaggtttggatggagcaaaaggaagtattggcagc
attggagaaaaaggagaatcaggaggtccaggtgcaatgggtccaccaggtccaatgggt
ccggcaggtccaagaggagaaagaggaagggaaggatcatctggtcctccaggtcttcgg
ggcattgatgggatgacaggtcctccaggcgaaccaggctccatagggaaacctgggcca
cctgggtttccaggaattcctggttcaaaaggagacatgggagctactggccccaaagga
agcccaggactgcaaggtcctcgaggtgattctggaatacctggacgtcctggggaacca
ggcaaaatggggccacccgggaaggatggatttaatggagaaaagggaagtttaggatca
cctggcgcgccaggtcctcaaggatttccgggaccaagagggagccctggcttgaatggt
agcccaggccctcttggtccaaaaggaacagctggacaacctggccgtgatggacccaaa
ggagagagtggaatgaaaggagagctcggtcaaatgggacctagaggtctacctggacca
actggatctgccggaagaagaggtcgtagaggaataagaggtccagctggacctcctgga
cctcttggagaaccaggcccgccaggaggacgaggcatgcctggagcagatggtccagca
ggaccaaaaggacagtccggagaccgcggagttcctggatctgcagggccgaagggtaaa
catggagacacgggaaggccgggggcacctggtcttcaaggcctaagaggagcaccaggt
agaattggaccaagagggcaaccaggaaagattggacctcgtggagaacctggtgctgat
ggaaaaactggcgaagtggggccacaaggactccaaggtcttccaggtccaatgggtcct
ccaggcgacaaaggtttaatcggccctcctggtcaagatggaaatccagggacacctggc
aatccaggaccccgtggagaccctggaacagacggtttaacagggcctcaaggcccacct
ggaccaactggaccatctggtgaaagaggcactcctggtccacccggaccaagagggttt
caaggaatgccaggagccactggcaaggatggtcgaaatggaaaggacggagaagcagga
ttgcctggtagagctgggcttcctggtgagcaaggaaaacaaggctcacggggattccct
ggtgagcggggagccattggtggccctggagctccaggtgaacgcggtgaacctggtggt
cctggtctagatggtcctccgggtgacattggtcccaaaggaaatccaggtcacaaaggt
ccaccaggcttagtgggtcttccgggtcaacgaggaatgcctggtcctgcaggttctaaa
ggatcctcaggagttcaaggtcctgttggtcctggtggacccagaggaaagcagggagag
cgaggtctacaaggtgtgacaggtttagttggcccacctggcgaacctggagcacaagga
gatccaggatcccctggccctgtaggagaaaccggtgctaccggaatgattggcgaacgt
ggttccccaggaccacaaggaatgcaaggatttcctggtccaccgggcatacctggaatg
ccaggtgtcaaaggtggccgtgggctccctggagccaagggtgatcaagggaaccctgga
tcagtcggtgggcctggggctcctggcccgtctggattaacaggactccctggttccaag
ggcgcaagaggtgaaccaggaccacgaggagaatctggaatgatgggacctccaggtcga
ccaggcttagctggacgaaacggtgagcctggacgacaagggcaaattggaatgcctgga
attgcaggcattaagggatcatccggaagccggggctctcctggaagaacagggccaagt
ggaccccctggaatgcctggtgctgaggggccaaaaggtggagtgggatctgatggacct
cctggtccatatggaaatccaggacctgcaggcccccctggagatagaggatcgccaggt
ttacctggtcccacagggccagttggaggtatgggcccacgtggtactcaaggagaacgc
ggagaatcaggaccaccaggaaaggaaggggagcaaggaccaaccggtttaccaggacct
catggtccccctggagtacgaggagagcgtggagagcaaggacaaactggcaaaccagga
gcacctggattaggtggaaggcctggagataagggaccccctggatctgctggatccatg
ggccctccaggtgggcctggacttccaggcccaccaggtaaaactggaaattctggaccc
ccaggagaaagaggagacagaggagactcaggaccaccaggcattgttggaccaccggga
atgattggtaaatctggcccccctggattgcaaggccctccaggagaggacggtaaacat
ggaatgaagggttcaaagggacacagtggattgattgggcttcaagggcttcctggccca
acgggcccccctggagacaagggccccccaggcaataatggtacccctggaactccagga
gagccagggcctcgtggaccaccaggaatggatggaattagtggccctcccggccttcag
ggacccccagggccaagaggtatgagtggtgatgaaggcaagcgtggacctcctggagaa
agaggagacactggtccacccgggccgccaggacaaagcaccgggtatgatgcagcagct
ctcgcagctcttatgagccaaggcaacactaagggccctgatccattggcaagtgatcag
ccacttggcattagtccaaaagatctgaataatgagcaacaaaaacaattggtcattcaa
gcatatcacaagctcaaggagtcttttgccgagtttgccaaaccagagggtaatcaagaa
tctcctgccaaaacttgccgagaactgaaagtggcccaccctaacaaaaatagtggagag
tactgggtggatcccaacggcggagatcctaaagacgccattctagtgtattgtgatatg
gaaaagagggccacgtgtctccagcctaagccgatcgtcacggaagaaaccacagttgag
acaagtgagaaggaggtctggttctctgacattcctagcgggttcaatttgaattacaag
gcggacagcaaccagatcaccttccttcaaatgctctctaccaaagccagtcaaaacatc
acttaccattgttccaactctgtggctttttatcatgccaagcgagatcattaccgtaag
gcggtgaccctaatgtcgtggaacgacctggaaatccgtcccaggggcaaatttagatat
acagtacctgtggacgaatgccagcacgaaaatgtggactgggctcagacgatcatcagt
atgaaagacaccaaacctgcccgtcttcccatcctggatgtgggcatccgtgacattgga
aacttacgtcagaagttcaagattgaagtgggccaagcttgctttgaataa

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