Tigriopus californicus (tidepool copepod): 131893209
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Entry
131893209 CDS
T09700
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03030
DNA replication
tcf03420
Nucleotide excision repair
tcf03430
Mismatch repair
tcf03440
Homologous recombination
tcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131893209
03420 Nucleotide excision repair
131893209
03430 Mismatch repair
131893209
03440 Homologous recombination
131893209
03460 Fanconi anemia pathway
131893209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131893209
03032 DNA replication proteins [BR:
tcf03032
]
131893209
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131893209
Transcription factors [BR:
tcf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131893209
DNA replication proteins [BR:
tcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131893209
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131893209
MMR (mismatch excision repair)
131893209
DSBR (double strand breaks repair)
HR (homologous recombination)
131893209
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
131893209
NCBI-ProteinID:
XP_059099167
LinkDB
All DBs
Position
2:11076701..11078782
Genome browser
AA seq
599 aa
AA seq
DB search
MSLTSNAVATFLAQGQIPPKGQSMILKVLGSKTLSVPDLKYRLAVSDGKDRFNSIVMILP
NPSAMPKKHDILEFNDSFKINPEKPDNMMVTKDGRNIWIVYNFKNLSLTSSNPATPVHGA
SNGHTSASTSTPPHPPVKRMGEGTPGPSLVSAKRSLFNSQVDKATLEIKSLNPYQNKYTI
RARVTHKGELRSWSNSRGQGKVFNVTFEDKSGDIQATGFNDQAEKFHPLLEVGKVFYLSH
AQVKPVHNRAFNQTSHNYELTLNQNSLLVECLANTDDVPTVSYQFTPIHDINFKSDKDAV
DVLGVCSKVSELREVIGKSTGKALKKRDVTLMDENESTISLTLWQDQAETFEGLHKIVTC
KNAVVSDFNGKSLSASFKSRLEVENLDLPEAQALRKWFDSNNMARKTAAMSGTPQSGNID
QLHDEFTSFGMINLEFMGTQINARYYNVDAVIAHLNGDKLTYKACTEDNCKAKVTESGSN
TYFCKKCGKSDSKFTYRYLMRGHALDVTDHQWFTAFDEVASEIMGLSATELMALKDRSDA
DFARKLDSIQYERYLFRVKCNMETYNDENRLKMVILKAAKVEPGSPAHIERLRNALKDA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcactcacttcaaacgccgtcgcgacctttctagcccaaggccaaatccctcctaaa
ggccaatccatgattttgaaggtcctaggctccaaaactttgtctgtgcccgatctgaaa
tatcggctcgccgtttccgacggcaaagatcgattcaactcgattgtgatgatcttgccg
aatccctcggcaatgccaaagaagcatgacattctcgaattcaacgattcattcaagatc
aatccagagaagccggataatatgatggtgaccaaggatggtcgcaacatctggattgtt
tataacttcaaaaacctatctttgacctcttccaatcctgccacacccgttcatggggcg
tctaatggacataccagcgcttccacctctacccctccacacccacccgtgaaaaggatg
ggcgagggaacgcccggaccttcattggtctcggctaaacggtctttgttcaatagtcag
gtggataaggccaccttggaaattaagagcctcaatccttatcagaataagtacacgatt
cgagccagggtcacacataaaggagaactacgatcctggagcaattcccgcggtcaagga
aaggtttttaacgtcacgttcgaggacaaaagcggggacattcaggctactggtttcaac
gatcaagccgagaaattccaccccttattggaggtgggcaaggtgttctatttgagccat
gcccaagtcaagcccgtccataatcgagctttcaaccaaacctcgcataactatgagttg
accttaaaccagaactcgcttttggttgaatgcttggccaatacggatgatgtgcccaca
gtaagttatcaattcactcccattcatgacatcaattttaagagcgataaggacgctgtg
gatgtcttgggcgtgtgttccaaagtgagtgaactccgtgaagtgattggcaagagcacg
gggaaggccttgaaaaaacgagatgtgactttaatggacgaaaacgaaagcaccatctcg
ttgactttgtggcaagatcaggccgagactttcgaagggttgcacaaaattgtgacttgt
aagaacgccgtggtgtccgattttaatggaaaatccctcagtgcctctttcaagagtcga
ctggaagtggaaaacctggacttgcccgaggctcaagctcttcgaaagtggttcgactcc
aataatatggcccgaaaaacggcagcgatgagtggaacaccgcaaagtggcaacatcgat
caattgcatgatgagttcacaagttttggcatgatcaacctggaattcatgggcacccaa
atcaatgccaggtactacaatgtcgatgccgtcattgcccatctcaatggggacaaacta
acgtacaaggcttgcaccgaagacaattgtaaggccaaggtcacagaatccggcagcaac
acatatttctgcaaaaaatgtggaaaaagcgattccaagttcacgtatcggtacttgatg
aggggtcacgctttggacgtaaccgatcatcagtggttcactgcatttgatgaagtggcc
agtgagattatgggcctttcggcaactgaactcatggctttgaaggatcgatctgacgct
gattttgcccgaaaactcgactctattcaatacgagagatatttgttccgtgtcaagtgc
aacatggagacctataacgatgagaatcgtttaaaaatggtcattttaaaagctgccaag
gttgaaccaggaagccctgcacatattgagaggcttcgaaatgccctcaaagatgcctag
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