Tigriopus californicus (tidepool copepod): 131893291
Help
Entry
131893291 CDS
T09700
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131893291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131893291
03036 Chromosome and associated proteins [BR:
tcf03036
]
131893291
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
131893291
Coactivators
SAGA/TFTC/STAGA complex
131893291
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
131893291
STAGA complex
131893291
TFTC complex
131893291
SAGA complex
131893291
SLIK complex
131893291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
TFIID_NTD2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_RFWD3
RMC1_N
WD40_like
eIF2A
Beta-prop_RIG_1st
Beta-prop_WDR35_TULP_N
Cytochrom_D1
PEP5_VPS11_N
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
131893291
NCBI-ProteinID:
XP_059099259
LinkDB
All DBs
Position
2:10239771..10249537
Genome browser
AA seq
677 aa
AA seq
DB search
MASSSNLTNHLHHHHSATSSTSSSNSHCDPPITGLMSQYLDRRRYPWPSGSNPGPSSVGA
SVSELALNHVIENAASSENSIHVACIDANGPQWEQQYSKFKLWISESSDSYKPELAQLLF
PMFTHLYLELIVNGLSPLAQKFHKKHQSTFLGNAEFAAYIQQLQMVQTTEDIQNNLTVNA
FMSCKYSVTLSNRTFHYLMHFLRTCAHPILIHILRGKIDLKLADALGAGSKMEGIKRVQH
EKSLKDQDFGPPHTTLLPKDKVKLNESIPSVSDTIKAVRDGISPLPSVYLYRLTSSHAHL
TCSTLSSDVQFLAAGSEHSGLYVWPLQPSSTKTDDSNGPIKDEPGSSSVNSNNSPSWSSC
QISSECEERTRSTFDSNGASRLLGHVGVVYDCAFLRRRDQHCFRDQYDASGGVSSQLPSE
YLLSAGEDASMRLWDLSSGQTRVIFQGHSYPIWSMDIDRLGINIVTGSMDQTAKLWDLEH
TFPLRIYAGHEKDVDVVKFHPNCNYLATGSLDKSIRMWSHADAQMVRVFSGHKGSVIALA
FSPDGNYLAAGGEDREVRIWDLASAGIVKELKGHSEAVHALAWSQDSSVLTSGGLDGTIR
HWDVKGPLRMGQNHATSAPANSPEMAACYQTDVSIQSLSYSPHNTLIATGLRTPGACPIF
DAPNLKHGGLANGEVLS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcctcgaatttgaccaaccatctgcatcaccaccattcagcgacctcctcc
acttcttcgtccaattcacattgtgacccgccgatcacgggcttaatgagtcaatacctg
gatcgaaggcgctacccgtggccatcgggctcgaacccggggccttcatcagtgggggcg
agcgtgtccgaattggccttgaatcatgttatcgagaatgcggccagttcggaaaactct
atccacgtggcgtgtattgacgccaacggacctcaatgggaacagcaatattccaagttt
aagttatggatctcggagtcatcggactcgtacaaacctgaattagctcaacttctcttc
ccgatgttcacccatttgtacctggaactcattgtgaacggattaagtcccttggcgcaa
aagtttcacaagaagcaccaatccacattcctgggaaatgcggaattcgcagcttacatc
cagcagctccaaatggttcaaaccactgaggatatccaaaacaacctcaccgtgaacgcg
ttcatgtcctgcaaatacagtgtgaccctatccaatcggacgttccactacttgatgcat
ttccttcgtacgtgcgcccatccaatcctcatccacattctgcgcggcaagatcgacctc
aaattggccgatgcgctgggagccggctccaaaatggaaggcatcaaacgggtccaacac
gaaaagagtctgaaggatcaagattttggcccaccccatacaacccttctccccaaggac
aaggtcaaactcaatgagtccattcccagtgtgagtgacaccatcaaggctgtacgcgac
ggaatctcgcccttgcccagtgtctatttgtatcgcctgacatccagccacgcccattta
acctgctccaccttatcgtctgatgtgcagttcctggcggcgggctcggaacactcgggt
ctgtatgtgtggcctctccaaccttcttcgaccaagactgatgactcaaatggacccatc
aaagacgagcctggttcaagcagtgtcaatagtaataattctccttcatggagctcttgc
cagatctctagtgaatgtgaggaacggactcgaagcacctttgactcgaacggggcctct
cggctgttgggtcacgtgggtgtggtgtatgattgtgccttcctgaggaggcgtgaccag
cattgttttcgtgaccaatacgacgcctcgggtggtgtaagcagccagttacccagtgaa
tatcttttgtcagccggcgaggacgcctcaatgcgattatgggacctgagctcgggacag
acccgcgttatcttccagggtcattcctatccgatttggtccatggacattgaccgatta
ggcatcaacattgtgacaggttccatggatcaaactgccaagctctgggatttggaacac
accttccctcttcgaatctatgctggtcatgagaaggacgtggatgtggtcaagtttcat
ccgaattgcaattacttggccacaggaagtctagataaatcaattaggatgtggtcccac
gcagatgctcaaatggtacgggtgttcagcggtcacaaaggctcagtcatcgctttggcc
ttctcaccggatggaaactatttggccgcaggtggcgaagaccgcgaagttcgaatctgg
gacctggcctcggctggcatcgtcaaagagctgaaaggtcacagcgaggctgtccatgcc
ttagcctggtcccaagactcgtccgtgctgacctcgggtggtctggatggaactatccgc
cattgggacgtcaaggggcctcttcgaatgggacagaatcacgccaccagcgcacccgcc
aattcgcctgaaatggcggcttgttaccagacagatgtcagtattcaatctctaagttat
tcacctcataacacgcttattgccaccggactgcgtacccccggagcctgtccgattttc
gacgcgcccaatttgaagcacggcggtttggccaatggtgaagtcttatcgtga
DBGET
integrated database retrieval system
