Tigriopus californicus (tidepool copepod): 131893333
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Entry
131893333 CDS
T09700
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03022
Basal transcription factors
tcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131893333
09124 Replication and repair
03420 Nucleotide excision repair
131893333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131893333
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131893333
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131893333
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131893333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
MOZART1
Motif
Other DBs
NCBI-GeneID:
131893333
NCBI-ProteinID:
XP_059099316
LinkDB
All DBs
Position
2:14507543..14513940
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AA seq
416 aa
AA seq
DB search
MEEDNKEYRWETGYEKTWEAITEDADGLVEVSVQELIQKARRKRMNEKFGKGVKLGMMRH
LFVVLDMSECMNNQDLKPTRLRCCLKLLENFIEEFFYLNPISQLGVITTRNKRAEVYSEL
TGNPKRHVESLKKLIEVQCAGEPSLQNSLDTAIQTLRHMPGHASRELLIIMGSLTTCDPT
EIDVTLQTCKQLNIRCSVISLAAEVXFFCVYFVXRIFKWLTKVTGGDFSVILDDCHFRDL
LQGHLEPPPSAAAAESSLIKMGFPCHSGQNESDSYSGLGLCMCHLDVGNEPKLSISGFLC
PQCHAKYCELPVECKSCNLTLVSAPHLARSYHHLFPLPAFIEVSLEDLAAMAVSGNCFAC
NKLFQSPRDKTVFKCPSCLRLFCSDCDIFIHETLHSCPGCASRHPTAHNTNGTTHR
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagataataaggaatatcgatgggaaacaggatatgaaaagacatgggaggcc
ataacggaggatgcggatggcctggtcgaggtgtccgtccaggaactgatccagaaagct
cgacgcaaacgcatgaacgagaaattcggcaaaggcgtcaaattgggcatgatgcgacat
ctctttgtcgtcctggacatgtccgaatgcatgaacaaccaggacctgaaacccactcga
ctccgatgctgtttgaaactgctggagaacttcatcgaggagttcttctacctcaatccc
atcagtcaactgggcgtcatcacgacccggaacaaacgagccgaggtctacagcgagctc
acgggcaaccccaaacgccatgttgagtcgctgaagaagctcatcgaagttcaatgtgcg
ggcgagccgtccttgcagaactccttggacacggccattcaaaccttgagacacatgccc
ggtcatgccagtcgggagctcttaatcatcatgggcagtttgaccacgtgtgatccaacc
gagattgatgtcactttgcagacgtgtaagcaacttaatatccgctgttccgtgatttcc
ttggcggccgaggtatgatttttttgtgtatattttgtctgacgcatctttaagtggctg
accaaagtcacgggcggggatttttccgtcatcctggatgattgtcattttcgagacttg
ctccaaggtcacttggaacctcctccttccgcggctgcggccgaatcctcccttatcaaa
atgggctttccttgccattcaggtcagaacgagtcggactcatattccgggctgggatta
tgcatgtgtcatttagacgtgggcaacgaacccaaactgagcatctcgggattcttgtgt
cctcagtgtcatgccaagtattgcgagttgcccgtggagtgcaagtcttgcaacctcaca
ttggtatcggctccccatttagcgcgatcctaccatcatctcttcccgttaccagccttc
attgaagtttcgcttgaggatttggctgccatggccgtgtcagggaattgcttcgcgtgt
aacaagttgttccaatccccccgtgataagacagtattcaagtgcccgagttgcttgcgg
ttgttttgctcagactgtgatatcttcattcacgagactttacacagttgccctggatgt
gccagtcgtcatccgaccgcacacaacactaacgggaccacacaccgttaa
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