Tigriopus californicus (tidepool copepod): 131893465
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Entry
131893465 CDS
T09700
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 2-like
KO
K17908
autophagy-related protein 18
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04136
Autophagy - other
tcf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
131893465
04136 Autophagy - other
131893465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131893465
03029 Mitochondrial biogenesis [BR:
tcf03029
]
131893465
Membrane trafficking [BR:
tcf04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
131893465
Mitochondrial biogenesis [BR:
tcf03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
131893465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
WD40
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
BCAS3_WD40
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
131893465
NCBI-ProteinID:
XP_059099484
LinkDB
All DBs
Position
2:13224270..13229186
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AA seq
489 aa
AA seq
DB search
MSSSSPSSSIQSGDVPIYTLDNHSVKDPPLPAVASTIHYLRFNQDCTSLAVGTSRGYNLY
SLSSALERLDPIHTNSAAEVKSKVRVVERLFSSSLVALVTQDEPRKLKVCHFKKGTYICG
CVYNNNTILAVKLNRARVVVCVDNELFIHNIRDMHILHTIKDTPPNPKGLVALSFNCDNC
FLAYPGSNTTGEVQLFDAFNLQAKIMIAAHDSPLAALAFNPSGERLATASEKGTVIRVFA
VEDGSKLFEFRRGVRRCATIYCMSFSQDSHYLVLSSNTETIHVFRMQDQQQPPHSQAHQA
LEDTSARRQSQCSTGSGGDESWMGYFSNAVSLGASYLPAQVTDTLNQTRSFATVTVPNAT
FNLGTAPNTVAIATIARELRLLLASSDGYLYIYNLPGDEGGECILIKQHRIDLSPVHSTS
TENLSGDVGLGVERSEPKPIRDDGHAQVHEGGSCSPASLPAVLKVNRPSSHSPPSLDDSP
PPTMQRPEI
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgagttcaccttcgtcgtccattcaatccggggatgtacccatctatactctg
gacaatcattccgttaaagatccgcctctacccgcagtggcctccaccattcactacttg
agatttaaccaggactgtacctctttggccgtgggcacttcccgtggttataatttgtat
tccttgtcttctgctttggagaggcttgatcccattcacacgaattccgcggccgaggtg
aaatccaaggtccgagtggtggaacgtttgttctcctcctcattggtggccttggtcact
caagatgagccccgcaagcttaaggtgtgccacttcaaaaagggaacatacatctgcggc
tgcgtctacaacaacaacaccatcttggctgtaaagctgaatcgagcccgagtggtggtg
tgtgtggataatgagcttttcattcacaatattcgagacatgcatattctccacacaatc
aaagacacgcctcctaatcccaaaggcttagttgctctctcgttcaattgtgacaactgc
tttctagcctaccctggttcaaacacgacgggtgaggtgcaattatttgacgccttcaac
ctccaggccaaaatcatgattgccgcccatgattcgcccctcgctgccctggcttttaac
ccatctggagagagattggccaccgcctctgaaaagggcacggttattcgggtgtttgcc
gttgaagacggctccaaactctttgaattccgacgtggagtgaggcgttgtgctaccatc
tactgcatgtctttcagtcaggatagtcattatttggtcttgagctccaacacagagacc
attcacgtgttccgaatgcaagaccaacaacagccgcctcattctcaggctcatcaagct
ttggaagatacatccgccagacgacaaagccaatgctctacagggagtggcggtgatgag
tcttggatgggttactttagcaatgccgtcagccttggcgcctcatatttgccagcacag
gtcaccgacaccttaaatcagaccaggtccttcgccacggtgacggtgcccaatgctacc
tttaatttagggactgctccaaatactgtggccattgccactattgccagggaacttcgt
cttctgttggcgtcctcagatgggtatctctacatatacaatcttccaggtgacgaaggt
ggggaatgtatcctgattaaacaacatcgcatagatttgagccctgtgcattcaacgtcg
actgaaaacctcagtggagacgtaggtttgggtgtcgagcggtcggagcccaagcccata
cgtgacgacggacacgcccaggttcacgagggcggctcttgctcaccggcctcattaccc
gccgtgctcaaggtgaaccgaccatcttcccatagtccgccctcattagatgattcgcca
cctcccacgatgcaacggccagagatttag
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