Thermococcus chitonophagus: CHITON_0128
Help
Entry
CHITON_0128 CDS
T04536
Name
(GenBank) RNA-binding protein, containing S1 domain
KO
K07573
exosome complex component CSL4
Organism
tch
Thermococcus chitonophagus
Pathway
tch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHITON_0128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tch03019
]
CHITON_0128
Messenger RNA biogenesis [BR:
tch03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CHITON_0128
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CHITON_0128
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
Auto_anti-p27
CvfB_2nd
A2L_zn_ribbon
zf_Tbcl_5
S1
Ribosomal_aS21
Zn_ribbon_3
FtrD-like
Zn_ribbon_IS1595
Trm112p
DZR_2
DZR
YnfU
Zn_ribbon_CLPX_N
HypA
Zn_Tnp_IS91
Zn_ribbon_NOB1
Zn_Ribbon_TF
Meiotic_rec114
Motif
Other DBs
NCBI-ProteinID:
CUX76907
UniProt:
A0A160VQ24
LinkDB
All DBs
Position
I:complement(107805..108401)
Genome browser
AA seq
198 aa
AA seq
DB search
MDEEQKRRTVKEGDFVLPGDYLGVIEEYLPGDGVIVEDGNLYSARAGWVKIDKDKIEISL
KPASSTPPIPKVGDIVYARVIDVKQQAVLLRMIKIEGRDNREIATSKLAGIHISQVKDGF
VEDLKNEFKIGDIVRARVITDEKSPIQLTTKDPDLGVVYALCSKCRTPLVRKGNQLVCPK
CGNVETRKLSTLYRKVKL
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
ttggatgaggagcaaaagaggaggacagtgaaggaaggggatttcgttcttcctggggac
tacctcggtgtgatagaggagtaccttcctggggatggggtcatagtcgaggatggcaac
ctctattcggcaagggctggctgggtgaagatagacaaggacaagatagagataagcctc
aagcctgcatcctccacaccaccaatcccgaaagtgggggacatagtgtacgctagggtt
atagatgttaagcagcaggccgttctcctgaggatgataaagattgaaggcagggacaac
agagagatagccacatcaaagctcgccggaatacatatctctcaggtcaaggacggcttc
gttgaggatttgaaaaacgagtttaagataggagacatagtaagggcgagagttataaca
gatgagaaaagcccgatccagctgacgacaaaggatcctgaccttggggttgtctacgct
ctctgctccaagtgcaggactcccctagttagaaagggcaaccagctcgtctgcccgaag
tgcgggaacgttgagacgagaaaactttccacactctacaggaaggtgaaactatga
DBGET
integrated database retrieval system
