KEGG   Thermococcus chitonophagus: CHITON_0689
Entry
CHITON_0689       CDS       T04536                                 
Name
(GenBank) DNA repair helicase Rad3
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
tch  Thermococcus chitonophagus
Pathway
tch03022  Basal transcription factors
tch03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tch00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CHITON_0689
  09124 Replication and repair
   03420 Nucleotide excision repair
    CHITON_0689
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tch03021]
    CHITON_0689
   03036 Chromosome and associated proteins [BR:tch03036]
    CHITON_0689
   03400 DNA repair and recombination proteins [BR:tch03400]
    CHITON_0689
Enzymes [BR:tch01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     CHITON_0689
Transcription machinery [BR:tch03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CHITON_0689
Chromosome and associated proteins [BR:tch03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    CHITON_0689
DNA repair and recombination proteins [BR:tch03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CHITON_0689
SSDB
Motif
Pfam: HBB Helicase_C_2 DEAD_2 DEAD ResIII AAA_30 Tautomerase_2 AAA_19 IstB_IS21
Other DBs
NCBI-ProteinID: CUX77468
UniProt: A0A161K9B5
LinkDB
Position
I:650441..652363
AA seq 640 aa
MLEHFPYQSLRPHQEEFITLVREAVKSGKNLIVEAPTGFGKTISVLAGVLPYAISLGYKV
IYLARTHKQMDRVIEELKAIRKVGKVSGIEFRSRKDLCLHKYIQTFAPDAYTSMVVCKSL
RKLGKCKFYENLKEKKDRVKEIVEFFLERPSFPWEVLEYSELLELCPYEVTRKVGEKANV
IVASYLYMLNPWIRQAFMDSLGIDYSDLIVIFDEAHNVPDQAISTLSDRLSVRTIERAIK
EAHEYGEDDVENFLSIFLKGLEILYKKRLENYESSEIPIRPQEVFEHPILILSYSPRDLA
EIINYMVEIGDAIREDKIERNLPPRSYVGRVGEFLWNWLSVGEREDYIHLFSKERGLALE
LVALDPSVALDFVNEVHSAIFMSGTLSPLEAFRDIIGVKAELKKFPRMVKRENAIVLVAR
DVSTRGEERSPSLYRKIAEYIFEAVKIIPKNVGVFTASYEVLEGIISTNVHIKIEEEVGK
KVFIEKKDASSSENDAMVTEFKAHAKKNGAVLFGVMGGRNSEGQDYSGDEMNGVVLVGIP
YARPTPRVQAQIRYFEKKFPGKGRYYGYVLPAHRKLAQAAGRVHRSAEEKGSIVILDYRV
LWSNVKKDLPDWMVETMKPVTLPLMRIRLRKFWRSGEIGS
NT seq 1923 nt   +upstreamnt  +downstreamnt
atgctagagcacttcccataccagagccttcgaccgcatcaggaagagttcataacccta
gtcagggaagccgttaaaagtgggaaaaatctaatagtggaggctcccacgggattcggg
aaaacgataagtgttcttgctggagtattgccctatgcaatctccctggggtacaaggtg
atttatctggcaagaactcacaagcagatggacagggtaatagaggagcttaaggcaata
agaaaggttggaaaagttagcgggattgagttcaggagtagaaaggatctatgcctacac
aagtacattcagacgttcgctccggacgcttacacgagtatggtcgtatgtaagagcctt
agaaagcttggaaagtgcaagttctacgaaaatctaaaggagaagaaagatagggttaag
gagatagttgaattcttccttgagagaccatcttttccctgggaagttcttgaatactca
gaactgctggagctatgtccttatgaggtaactaggaaggttggggagaaggccaacgta
atagttgcaagctatctctatatgctgaacccatggatcaggcaggcctttatggacagt
cttggtattgattattctgatctgatagtgatatttgatgaggcccataacgttccagat
caagcaatctcaacgttaagcgacaggctaagcgtgaggacgattgagagagcaattaaa
gaggcccatgaatacggggaggatgacgttgaaaacttcctttcgatattcctaaagggg
ctggagatactgtacaagaagagattagagaattatgaatcctccgagattcctataagg
ccccaggaagtctttgaacatccaatcctcatactctcttactctcctagggatttggct
gagatcataaactacatggttgaaattggggatgcgataagagaggacaaaatagagagg
aacctcccaccaaggagctacgttggaagagtgggggaatttctatggaactggctctcc
gttggagagagggaggattacatccatttattcagcaaggaaaggggactcgctctagag
ctcgtagcccttgatccttcagtggccctagactttgttaacgaggttcactcggcaatc
ttcatgtcaggaacgctcagccccttggaggcatttagggatatcataggtgtaaaagcc
gagctaaagaagttccccaggatggtaaaaagggagaatgcaatagttttagttgcgagg
gatgtttccacgaggggagaagagaggagccctagcctgtacaggaagatcgccgagtac
atttttgaggccgtaaagataattcccaaaaacgtgggcgtttttacagcttcatacgaa
gtgctggaggggataataagcaccaatgttcacataaagatcgaggaggaagttggaaag
aaggtgttcatagaaaagaaggatgcaagctcaagtgaaaatgatgctatggttacagag
ttcaaggcacatgcaaagaaaaacggggcagttctctttggtgttatgggcggaaggaac
agcgagggtcaggactactcaggagatgaaatgaatggtgtagttctggtgggcatccct
tatgcccggccaactccgagggttcaagcccagataaggtactttgaaaagaagttccct
gggaagggaaggtactatggctacgttctacccgcccacaggaagctcgctcaagctgct
ggaagagttcatcgctctgctgaggaaaagggaagcatagttatccttgactatagggtt
ctgtggagtaacgttaaaaaggatcttcccgactggatggttgagactatgaagccggtg
actctgcctcttatgagaatcagacttaggaagttctggaggtctggtgagattggaagt
tga

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