Thermococcus chitonophagus: CHITON_1791
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Entry
CHITON_1791 CDS
T04536
Name
(GenBank) Ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
tch
Thermococcus chitonophagus
Pathway
tch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHITON_1791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tch03019
]
CHITON_1791
Messenger RNA biogenesis [BR:
tch03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CHITON_1791
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CHITON_1791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
CUX78570
UniProt:
A0A160VU95
LinkDB
All DBs
Position
I:complement(1667984..1668730)
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AA seq
248 aa
AA seq
DB search
MEKPEDIKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPRE
IHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRT
AIDIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGQIVLDLNKEEDN
YGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYVKI
AQEVEGSE
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacctgaagatatcaagctgattgatgaaaatggtagaagaattgatgggaga
aagaagtacgagttgagaccaataaagatgaaagttggcgttttgaagaatgcaaatggt
tccgcgtatattgaatggggtaagaacaaaataatagctgctgtttatggtcctagagag
atacaccccaaacaccttcagagaccagatagagctattctgagagtccgttataacatg
gcccccttcagcgttgaggaaaggaagaagcctgggcctgataggaggagcatagagata
agcaaggtaataaagggtgcccttgagcctgctttaatcttggagatgttccctaggacc
gcaatagacatctttatagaggtccttcaggcggatgcaggtactagggttgctggaatt
actgctgcatcacttgcattggctgatgccggaatcccaatgagggacttagttgcagca
tgtgccgctggtaagattgagggtcaaatagtcctcgacctaaataaagaggaagacaac
tatggagaggccgatgttcccgttgcaataatgcccctcaagaatgacataacactgctc
cagatggatggttatctgactaaggatgagttcattgaagcagttaagctggccataaag
ggagcaaaggccgtttaccagaagcagagagaagccctgaaagagaagtacgttaagata
gcccaggaggttgagggaagtgagtga
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